PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0001051.1_g040.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 170aa MW: 18298.7 Da PI: 8.8593 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 40.8 | 6.5e-13 | 4 | 63 | 1 | 55 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeere 55 +C++C+vlr++C+++C ++p + p++q++++ +++k++G++ +l+l++a +++ r+ Pav_sc0001051.1_g040.1.mk 4 SCNGCRVLRKGCSEKCSIRPSIewiksPDSQANATLFLAKFYGRAGLLNLINAGSQHLRP 63 6****************************************************9999886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence |
MRMSCNGCRV LRKGCSEKCS IRPSIEWIKS PDSQANATLF LAKFYGRAGL LNLINAGSQH 60 LRPGLPIAGV DADALHLIPS PPNKSGDIRH VFRDSNSGGS RNKVATRNRF KRSMNRTKTH 120 PGSVTEFATG SHMAQFCNFP DPDDLCPSPE GNGAGGDYDG EVGLELTLGL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 5e-39 | LBD family protein |