PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001046.1_g580.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 450aa    MW: 50531.8 Da    PI: 4.3353
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001046.1_g580.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.21.9e-41171492128
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratks 80 
                                 pGfrF Pt+e lv++yLkkk+egk+ +++++i+e+d++k+eP + p+      +  +e ew+fFs+ d ky++++r nrat++
  Pav_sc0001046.1_g580.1.br  17 LPGFRFYPTEEVLVSYYLKKKIEGKDSNFSHIIPEIDVCKHEPCEVPAffeeaDFPDHEMEWFFFSQPDYKYTNSTRCNRATDQ 100
                                69***************************999***************6455443444777************************ PP

                        NAM  81 gyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                g+ k tgk +e++++ +++++g k+tL+fy+gr pk++kt+W+mhey l
  Pav_sc0001046.1_g580.1.br 101 GFYKITGKVREIKARrSKAVIGKKRTLTFYEGRVPKAKKTNWIMHEYYL 149
                                *************98566679**************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    
MSSISTMEEG DSIPVVLPGF RFYPTEEVLV SYYLKKKIEG KDSNFSHIIP EIDVCKHEPC  60
EVPAFFEEAD FPDHEMEWFF FSQPDYKYTN STRCNRATDQ GFYKITGKVR EIKARRSKAV  120
IGKKRTLTFY EGRVPKAKKT NWIMHEYYLT NTELAQLGPN TNQRKDFVLC RLKNKSANYM  180
KLKDDSICDE LADTGSGGGI ASNSEDDQAA GADMISEPLE HLASQEVGDV LNGNGSGLIE  240
NNDISICDDD QIDAWIFSDF DSQAAYDLLQ EYCAEPGENL DSPLPPPQPP QPPLPQDYCS  300
STQQSPLYTN QGNVPYVYDG DCNRQQSPIG DRNSYLTHKN NMSMNNQIEP VSNITYGVQN  360
RATGESNSEV CNNSTNDFKE PVSSITYNCN NGAPDERILE AVKFQGDGPR ENLGSPSDPF  420
QLQDFTLLSP MNSELGDFEH GNKLYWHAMS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.18e-43NAC family protein