PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001046.1_g450.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 567aa MW: 62460 Da PI: 7.9812

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001046.1_g450.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.5	2e-15	82	126	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ Pav_sc0001046.1_g450.1.mk 82 RERWTHEEHNKFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 126 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence
MPLYTLWSLC NCLRFLNHSH PLTKTMLSPA SVRRAIGVSA TIHRLLESSQ SAMAFSEVME 60 PNSSREDLVI KARKPYTITK QRERWTHEEH NKFLEALKLY GRAWQRIEEH IGTKTAVQIR 120 SHAQKFFSKL EKEAHVNGVP IGQSIGIDIP PPRPKRKPSN PYPRKSCSAA STCATLHVGA 180 KVGKLLSSAS SSRYKQVVDL EKEPLHERPF GEEKANNAEN QVANCAEVFT LLQDDHCSSV 240 SSANNNAIPS QVALGNACTF RDATNESHVT IKLKGNQNLK KIDAKMIVGD TGTSGAPNLG 300 NTNNAFQKEL VQGEKFSSIT VSSLLQNPAA HSAASSTAAF WPYANVKNRE DPPSMAAIAA 360 ATVTAATAWW AVHRLLPLQT DFSCSPISMT GVPVPSMDTG QAPPAKRERG ESSLQIPSLQ 420 DQQLDSKHTE AVEAQHSNIA KANTDDEKDV ASTEEVHDSN HARIRKKVDR SSYGSNTPCD 480 SEDETAAIEK NEKGKEELKE PNTSHPAAEY SQRRSRCVSN MYDSWKEVSE EGRLAFRALF 540 SRDVLPQSFS LTQDLKIKGH QNDGMED

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence

MPLYTLWSLC NCLRFLNHSH PLTKTMLSPA SVRRAIGVSA TIHRLLESSQ SAMAFSEVME  60
PNSSREDLVI KARKPYTITK QRERWTHEEH NKFLEALKLY GRAWQRIEEH IGTKTAVQIR  120
SHAQKFFSKL EKEAHVNGVP IGQSIGIDIP PPRPKRKPSN PYPRKSCSAA STCATLHVGA  180
KVGKLLSSAS SSRYKQVVDL EKEPLHERPF GEEKANNAEN QVANCAEVFT LLQDDHCSSV  240
SSANNNAIPS QVALGNACTF RDATNESHVT IKLKGNQNLK KIDAKMIVGD TGTSGAPNLG  300
NTNNAFQKEL VQGEKFSSIT VSSLLQNPAA HSAASSTAAF WPYANVKNRE DPPSMAAIAA  360
ATVTAATAWW AVHRLLPLQT DFSCSPISMT GVPVPSMDTG QAPPAKRERG ESSLQIPSLQ  420
DQQLDSKHTE AVEAQHSNIA KANTDDEKDV ASTEEVHDSN HARIRKKVDR SSYGSNTPCD  480
SEDETAAIEK NEKGKEELKE PNTSHPAAEY SQRRSRCVSN MYDSWKEVSE EGRLAFRALF  540
SRDVLPQSFS LTQDLKIKGH QNDGMED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.3	4e-76	MYB_related family protein