PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000978.1_g030.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 203aa MW: 23073.3 Da PI: 5.8745 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.6e-18 | 151 | 203 | 2 | 54 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ +++keq +Le+ F+++ +++ +++++LA+kl+L rqV vWFqNrRa+ Pav_sc0000978.1_g030.1.mk 151 RKKLRLSKEQSATLEDSFREHTTLNPKQKQDLARKLNLRPRQVEVWFQNRRAR 203 788899*********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 79.8 | 4.3e-26 | 151 | 203 | 1 | 53 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRAR 53 +kk+rlskeq+++LE+sF+e+++L+p++K++lar+L+l+prqv+vWFqnrRAR Pav_sc0000978.1_g030.1.mk 151 RKKLRLSKEQSATLEDSFREHTTLNPKQKQDLARKLNLRPRQVEVWFQNRRAR 203 69**************************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence |
MSFDEACNTG LGLSLGCSDS PDHDHTNLQA PPDHHHHHHH QNMYKNKQIQ LKYDHLLPSL 60 TLGPSDASKI EEAESTDLHQ VVTVQEQASS PCSGAVSSFS NSSSFKRDRD LGGEEIEVEV 120 EVEVEEERVV NITSSRASED LYEQDHEGSP RKKLRLSKEQ SATLEDSFRE HTTLNPKQKQ 180 DLARKLNLRP RQVEVWFQNR RAR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22800.1 | 4e-31 | HD-ZIP family protein |