PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000912.1_g030.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GRF

Protein Properties

Length: 589aa MW: 63355.4 Da PI: 8.1032

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000912.1_g030.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.8	1.1e-24	210	254	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC+r++++++k+CErH++rgr+rsrk++e+ Pav_sc0000912.1_g030.1.mk 210 DPEPGRCRRTDGKKWRCWRDAVPDQKYCERHMNRGRHRSRKPVEP 254 79****************************************985 PP
2	QLQ	62.6	1.1e-21	144	180	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+P++Ll +i+k Pav_sc0000912.1_g030.1.mk 144 GPFTPSQWMELEHQALIYKYITANVPIPSNLLIPIKK 180 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 589 aa Download sequence
MDFGVVGFDG LGGAAAETGF ASLASSSSDQ ETKHQCYGSG LHKQGRSAGT LEEDWRSSKL 60 PKTDDFLSAS KTMPNNSTHF SDGQQLLSFS NSPNLEAVLV DKSSQNASLP YFHQPLSAFN 120 RSAGHSTGSF NGAAMHWAIA GARGPFTPSQ WMELEHQALI YKYITANVPI PSNLLIPIKK 180 ALDSAFPNGL PRPNTLGWGP IHLGFSNNTD PEPGRCRRTD GKKWRCWRDA VPDQKYCERH 240 MNRGRHRSRK PVEPVAGTTT ATTTTTSKQL MPSASSSASS VPMPAGGGSS SLSIANQQLK 300 SLQPAASNSS AATQMNRMFM NKENVGERMH QTPGPSMLSK ENPCLIQKQQ IGYEESSRTE 360 FGLVPSDSLL NPSQKGSSLM SCRNYGSSSQ NLTDPAETNS QQHSLRHFID DWPKNQSDRP 420 AISWPDQFDM QSDRTQLSIS IPIASSDFIP STSSTNNEKL TLSPLRLSRE LDPKPMGLGV 480 GGALNAQNSK QANWIPISWE TSLGGPLGEV LHHTNNNTAA ELKNSSVLNL MTEGWDKNSP 540 SSLGSSPTGV LQKTAFGCLS NSSAGSSPRA ENNNLLGSSM LDSSSLPAL

Sequence ? help Back to Top

Protein Sequence Length: 589 aa Download sequence

MDFGVVGFDG LGGAAAETGF ASLASSSSDQ ETKHQCYGSG LHKQGRSAGT LEEDWRSSKL  60
PKTDDFLSAS KTMPNNSTHF SDGQQLLSFS NSPNLEAVLV DKSSQNASLP YFHQPLSAFN  120
RSAGHSTGSF NGAAMHWAIA GARGPFTPSQ WMELEHQALI YKYITANVPI PSNLLIPIKK  180
ALDSAFPNGL PRPNTLGWGP IHLGFSNNTD PEPGRCRRTD GKKWRCWRDA VPDQKYCERH  240
MNRGRHRSRK PVEPVAGTTT ATTTTTSKQL MPSASSSASS VPMPAGGGSS SLSIANQQLK  300
SLQPAASNSS AATQMNRMFM NKENVGERMH QTPGPSMLSK ENPCLIQKQQ IGYEESSRTE  360
FGLVPSDSLL NPSQKGSSLM SCRNYGSSSQ NLTDPAETNS QQHSLRHFID DWPKNQSDRP  420
AISWPDQFDM QSDRTQLSIS IPIASSDFIP STSSTNNEKL TLSPLRLSRE LDPKPMGLGV  480
GGALNAQNSK QANWIPISWE TSLGGPLGEV LHHTNNNTAA ELKNSSVLNL MTEGWDKNSP  540
SSLGSSPTGV LQKTAFGCLS NSSAGSSPRA ENNNLLGSSM LDSSSLPAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	8e-85	GRF family protein