PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000893.1_g540.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

HSF

Protein Properties

Length: 412aa MW: 46456.9 Da PI: 4.4325

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000893.1_g540.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.3	1.3e-34	25	116	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 Fl+k ye+++d+e +++iswse+g+sfv++d+++f+ +LpkyFkhsnf+SF+RQLn+YgF+k+++++ w F+++ Pav_sc0000893.1_g540.1.mk 25 FLRKCYEMVDDNEADSIISWSETGDSFVIWDMTQFSILLLPKYFKHSNFSSFMRQLNIYGFRKIDSDR---------WVFANEG 99 9**************************************************************999.........*** PP XXXXXXXXXXXXXXXXX CS HSF_DNA-bind 86 Fkkgkkellekikrkks 102 F +g+k+ll++i r+k+ Pav_sc0000893.1_g540.1.mk 100 FIQGQKHLLKNISRRKH 116 ************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MVKSAAKSED GSGSGSGSGG SVAPFLRKCY EMVDDNEADS IISWSETGDS FVIWDMTQFS 60 ILLLPKYFKH SNFSSFMRQL NIYGFRKIDS DRWVFANEGF IQGQKHLLKN ISRRKHPQGT 120 DQRKALQQKD NPDGPCENII ENGLWREVEN LKTDKVALKQ ELVKLRQHQE ISENNLLLLR 180 NRLRGMEKNQ QQMLSFLVIA MQSPGFLVQL LQPKENSWRI AEPGNMLEQG VDDRIPITSD 240 GAIVRYQPPM DEAPKPVLAA NSGADKQTEF DSYIDGMNDF VVNPDFMKML MDEKLSSLEN 300 QAPYTLPDIS DDGAWEQLLL GSPFLEDIEA TEEDGKETVD SRMEVESTAS ELQESQNFDT 360 LMEQMKKSQN FASESTVYGS NVESSQSLEH ITEQMGYLAS DSNSNRGTQS GK

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MVKSAAKSED GSGSGSGSGG SVAPFLRKCY EMVDDNEADS IISWSETGDS FVIWDMTQFS  60
ILLLPKYFKH SNFSSFMRQL NIYGFRKIDS DRWVFANEGF IQGQKHLLKN ISRRKHPQGT  120
DQRKALQQKD NPDGPCENII ENGLWREVEN LKTDKVALKQ ELVKLRQHQE ISENNLLLLR  180
NRLRGMEKNQ QQMLSFLVIA MQSPGFLVQL LQPKENSWRI AEPGNMLEQG VDDRIPITSD  240
GAIVRYQPPM DEAPKPVLAA NSGADKQTEF DSYIDGMNDF VVNPDFMKML MDEKLSSLEN  300
QAPYTLPDIS DDGAWEQLLL GSPFLEDIEA TEEDGKETVD SRMEVESTAS ELQESQNFDT  360
LMEQMKKSQN FASESTVYGS NVESSQSLEH ITEQMGYLAS DSNSNRGTQS GK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67970.1	1e-101	HSF family protein