PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000890.1_g1020.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 567aa    MW: 63245.1 Da    PI: 8.7617
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000890.1_g1020.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.42e-1622107899
                                 -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                          B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                                 s  l+s rl +p +f+ +++g++     ++l  +sg+ W+v l   +k g  ++  GW  Fv+++ ++ gDf++F++dg+ +f
  Pav_sc0000890.1_g1020.1.mk  22 SADLSSERLKIPERFMIHMEGITS--GLVSLFGPSGNAWNVDL--IQKNGDLFFHHGWPAFVRDHFVECGDFLIFRYDGELCF 100
                                 66788999********99999954..48***************..77778899*************************99999 PP

                                 ..EEEEE-S CS
                          B3  91 elvvkvfrk 99 
                                   +v +f++
  Pav_sc0000890.1_g1020.1.mk 101 --TVLIFDQ 107
                                 ..9999986 PP
2B341.62.3e-132473271394
                                 TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                          B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                                 s  l +p kf  +h   ++++++l l + +g+sW+v+    ++   +++l +GW  Fv+ n++k gD+++F+l+++ ef+ +v
  Pav_sc0000890.1_g1020.1.mk 247 SYTLNIPCKFSVAHL--PNCKVKLALHNWKGESWTVNSVPsTRVHTSHTLCGGWMAFVRYNDIKLGDICIFELVRECEFRVHV 327
                                 556899****99996..45999***************9445555667999************************999996665 PP
3B347.62.9e-15456547296
                                 EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEE CS
                          B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvv 81 
                                 +k++++ +   s  l +p +f +eh  +     +++++l++++g+ W+v+   + k++  +++ +GW  Fv+ n+++ gD+++
  Pav_sc0000890.1_g1020.1.mk 456 VKIMKKFNICGSYTLKIPYQFSTEHlpN----YKTEIVLRNSKGECWTVNSVPDSKGRVvHTFCGGWMAFVRGNDVNIGDICI 534
                                 5666555666667899*********533....3468***************5544444379999******************* PP

                                 EEE-SSSEE..EEEE CS
                          B3  82 Fkldgrsefelvvkv 96 
                                 F+l+g  ++e+ v++
  Pav_sc0000890.1_g1020.1.mk 535 FELVG--KREMQVHI 547
                                 **998..45556666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    
MAEEAQKETS NARRPHFFAF YSADLSSERL KIPERFMIHM EGITSGLVSL FGPSGNAWNV  60
DLIQKNGDLF FHHGWPAFVR DHFVECGDFL IFRYDGELCF TVLIFDQSAC EKEAAFHSER  120
GQDSSNFEKY MGRKRAREEA ASSGKLVDGV AKKMRDSSSE EGCGHEGVMG EEATCSKEIK  180
QAEKPGLDIV LCKANASIQN MCGKGDGLNV NGRVCVQMSS AHEIAQSFSS SNPYFVRIMK  240
SFNISGSYTL NIPCKFSVAH LPNCKVKLAL HNWKGESWTV NSVPSTRVHT SHTLCGGWMA  300
FVRYNDIKLG DICIFELVRE CEFRVHVQSG ETSSWLSAEL ALPSIKTFKS LSKIMTGNSP  360
KVHSKSIRKI EKADKIAPKK FQEAAFTNDA RKYGSTSKSL TKVSLPQSKA ANKKLVNHRK  420
KVVEDELNPG SSLRMRLTLD EERAARSFTS CFPSFVKIMK KFNICGSYTL KIPYQFSTEH  480
LPNYKTEIVL RNSKGECWTV NSVPDSKGRV VHTFCGGWMA FVRGNDVNIG DICIFELVGK  540
REMQVHISGV GKKGFDHQDG EATSNAV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-21B3 family protein