PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000882.1_g040.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 550aa MW: 63894.1 Da PI: 7.3585

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000882.1_g040.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.4	1.5e-15	58	141	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +Y+eY+k++G + r+s +k ++ge + t C +egk ++++++ +++++t+tgCka+++ k dg+w++++++l+H Pav_sc0000882.1_g040.1.br 58 YYREYGKQLGVRKRTS--QKG-DEGELKYVTISCGREGKYKSKSSN---VLKPHPSTKTGCKARVRAGKLLDGRWQINSVKLDH 135 8******9555444..444.6699***********99888...899**************************** PP FAR1 86 nHelap 91 nH+++p Pav_sc0000882.1_g040.1.br 136 NHDMSP 141 9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence
MSSSSFMSSY INQEYDGVQM EKNDDEAASE EPELENRENV QEPQVGMTFK NIDEIVVYYR 60 EYGKQLGVRK RTSQKGDEGE LKYVTISCGR EGKYKSKSSN VLKPHPSTKT GCKARVRAGK 120 LLDGRWQINS VKLDHNHDMS PTKARYFRCH RTMSSYMKRR IEFNDIAGIR LNKSYNSLVV 180 EAGGHENISF LEKDCRNYIE NVRRLRLGEG DATAIQTSFL NMQAQNSKFF YAIDLDQDGR 240 LRNVFWADAR SRAAYEEFGD VTFDTTYLTN KYDMPFAPFV GVNHHGQSIL LGCGLISSED 300 TDTFIWLFKS WLACMHGHAP RGIITDQDKA MKSAIEIIFP NTRHRWCLWH IMNKFPSKLN 360 RYKQYESIMY ALQSIVCGSL EKVEFEEGWD KIIEKYQLQD NEWLAGLYNE RQRWVPCFVK 420 DSFWAGMSTT QRSESMNAFF DGHVNSKTTL KQFVEQYENA LKVKVQKEKQ EDFKSSSIGF 480 DCGTHYNMEK QAQEVYTISK YKEFHDELIG KMYCDYVSHK VNGANFEYQI SEDFMIEGKK 540 KKEALFQGLA

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence

MSSSSFMSSY INQEYDGVQM EKNDDEAASE EPELENRENV QEPQVGMTFK NIDEIVVYYR  60
EYGKQLGVRK RTSQKGDEGE LKYVTISCGR EGKYKSKSSN VLKPHPSTKT GCKARVRAGK  120
LLDGRWQINS VKLDHNHDMS PTKARYFRCH RTMSSYMKRR IEFNDIAGIR LNKSYNSLVV  180
EAGGHENISF LEKDCRNYIE NVRRLRLGEG DATAIQTSFL NMQAQNSKFF YAIDLDQDGR  240
LRNVFWADAR SRAAYEEFGD VTFDTTYLTN KYDMPFAPFV GVNHHGQSIL LGCGLISSED  300
TDTFIWLFKS WLACMHGHAP RGIITDQDKA MKSAIEIIFP NTRHRWCLWH IMNKFPSKLN  360
RYKQYESIMY ALQSIVCGSL EKVEFEEGWD KIIEKYQLQD NEWLAGLYNE RQRWVPCFVK  420
DSFWAGMSTT QRSESMNAFF DGHVNSKTTL KQFVEQYENA LKVKVQKEKQ EDFKSSSIGF  480
DCGTHYNMEK QAQEVYTISK YKEFHDELIG KMYCDYVSHK VNGANFEYQI SEDFMIEGKK  540
KKEALFQGLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-113	FAR1 family protein