PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000824.1_g140.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

TALE

Protein Properties

Length: 382aa MW: 42623.6 Da PI: 6.8197

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000824.1_g140.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.5	2.5e-09	309	343	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ Pav_sc0000824.1_g140.1.mk 309 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 343 569*****************************885 PP
2	ELK	41	3.9e-14	263	284	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ Pav_sc0000824.1_g140.1.mk 263 ELKGQLLRKYSGYLGSLKQEFM 284 9********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MEGGSNGTCS MMAFGENSSS NGGGLCPMMM VPALMTSHHS HHHHHQHHHP TNPTNADPNT 60 TTPFQLPQLP PSNHNRNSIS SFIFNDHHPN NNNHPAAAAA CYFMDNNNSN HDGSSSSSSS 120 SVKAKIMAHP HYHRLLASYI NCQKVGAPPE VVARLEEACA SAASIGQMMS SSSGSGCLGE 180 DPALDQFMEA YCEMLTKYEQ ELSKPFKEAM IFLQRVESQF KALTLSSSSD SAVCGDGLDR 240 NGSSEEEVDV NNNFIDPQAE DRELKGQLLR KYSGYLGSLK QEFMKKRKKG KLPKEARQQL 300 LDWWSRHYKW PYPSESQKLA LAESTGLDQK QINNWFINQR KRHWKPSEDM QFVVMDATHP 360 GHYYMDTVLG NPFPMDISPP LL

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MEGGSNGTCS MMAFGENSSS NGGGLCPMMM VPALMTSHHS HHHHHQHHHP TNPTNADPNT  60
TTPFQLPQLP PSNHNRNSIS SFIFNDHHPN NNNHPAAAAA CYFMDNNNSN HDGSSSSSSS  120
SVKAKIMAHP HYHRLLASYI NCQKVGAPPE VVARLEEACA SAASIGQMMS SSSGSGCLGE  180
DPALDQFMEA YCEMLTKYEQ ELSKPFKEAM IFLQRVESQF KALTLSSSSD SAVCGDGLDR  240
NGSSEEEVDV NNNFIDPQAE DRELKGQLLR KYSGYLGSLK QEFMKKRKKG KLPKEARQQL  300
LDWWSRHYKW PYPSESQKLA LAESTGLDQK QINNWFINQR KRHWKPSEDM QFVVMDATHP  360
GHYYMDTVLG NPFPMDISPP LL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	279	288	LKQEFMKKRK
2	285	289	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-140	TALE family protein