PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000823.1_g270.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 194aa MW: 21499 Da PI: 5.8418

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000823.1_g270.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	119	2.8e-37	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C aCk+lrrkC+++C++ap+f+ e+ +f ++hk+FGasnv++ll +lp ++r +a+ s+ yeA+ar++dP+yG+v++i++l Pav_sc0000823.1_g270.1.br 7 PCGACKFLRRKCVTGCIFAPHFCYEEgDVDFSAIHKVFGASNVSRLLVHLPLSDRCKAAMSISYEAQARIQDPIYGCVSHIFAL 90 7*********************99789*************************************************** PP DUF260 84 qqqleqlkaelallkee 100 qqq+ +l+a+la lk++ Pav_sc0000823.1_g270.1.br 91 QQQVVNLQAQLAFLKDQ 107 **********99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence
MAGCGSPCGA CKFLRRKCVT GCIFAPHFCY EEGDVDFSAI HKVFGASNVS RLLVHLPLSD 60 RCKAAMSISY EAQARIQDPI YGCVSHIFAL QQQVVNLQAQ LAFLKDQAAQ SFVNGSNPNQ 120 AAQSWNYENG IMNSNIPEEN LVNIPEENVS YGSFEEGTSH SMSSFGMQTN YNRQWGFQDA 180 DELQSVVSSY IHHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	2e-49	LBD family protein