PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000800.1_g1130.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 1038aa    MW: 114039 Da    PI: 5.0199
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000800.1_g1130.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-183783148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Pav_sc0000800.1_g1130.1.mk 37 KGQWTPEEDEILRRAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83
                                799****************************9.************986 PP
2Myb_DNA-binding66.45e-2189135148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 +g+W++eEde+++++vk++G++ W+tIa++++ gR +kqc++rw+++l
  Pav_sc0000800.1_g1130.1.mk  89 KGPWSKEEDEIIIELVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135
                                 79******************************.*************97 PP
3Myb_DNA-binding47.15.5e-15141183145
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                 + +WT++E++ l++a++++G++ W+   + ++ gRt++ +k++w+
  Pav_sc0000800.1_g1130.1.mk 141 KEAWTQDEELALIRAHQMYGNK-WAELTKFLP-GRTDNAIKNHWN 183
                                 579*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1038 aa     Download sequence    
MEGDRTNSTP SEGLGDSIQK VRALHGRTSG PTRRSTKGQW TPEEDEILRR AVQRFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVKKYGPK KWSTIAQHLP  120
GRIGKQCRER WHNHLNPGIN KEAWTQDEEL ALIRAHQMYG NKWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL DSYLKSGLLT QFQGLPHVGH QNQSMLSSSS RMQSSGDDSG AKAAEGEEIS  240
ECSQDSTVAG CFLSATEMTN VVPHPREEFQ INEVSRLGND PSCSPASCSE PYYPSIGDAT  300
FSIPEIPPEM VCSKFIEQNF SHEAGASMSG DFQFNLHELP INSSLECGQE SSRMHTHCMG  360
CNESHEGVNA PFQTSTSMGN MAVGFVKSEH MLISDDECCR VLFSDAMNGG CFSSRDFTNG  420
ANMVDLGACT DSVLLQPSNL QISETGRTSA SQVYHPLSSD VTGTSCSQVV SAHEGPLIYA  480
GEPSHLFRVQ EQEFVTNSND GFIYTNDSAS NDTGMQEQSD LVKDPSKLVP VNTFDSGLDS  540
QNCPVDARSD EQTEQQDGGA LCYEPPRFPS LDIPFFSCDL VQSGNDMQQE YSPLGIRQLM  600
MSSMNCLTPY RLWDSPTRES SPDAVLKSAA KTFTGTPSIL KKRHRDLLSP LSPLSDRRID  660
KRLGTDLTSS LARDFSRLDV MFEESEEKTT LLSPSSNKNR NSDSPSEDKE NMGTSESRIE  720
IGIDSAAISD DGIAHKDFDN GESQEKTKQF QGIADIDAKN EVDVVPTSQI AQQTSGVLVE  780
HNANDLLLCS PVGCKAEKAL GTSTRTPRSQ FRKSFEATNP GVPSKSFSAR QCASVKSPTI  840
CVKKHESYSL ADTCVQSDSL SAPPETTGDN AGNDISIENI FGDTPFKRSI ESPSAWKSPW  900
FINSFVPGPR VDTEISIEDI GFFMSPGDRS YDAIGLMKQI SEQTAAAYAN AQEVLGNETP  960
ETLFRERRKN QALVDPENNH GPPNQPGSSS LSAANVLVER RTLDFSECGT PGKGTENAKS  1020
SNAKTFSSPS SYLLKGCR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0MYB family protein