PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000766.1_g310.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 306aa    MW: 34801.8 Da    PI: 7.1592
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000766.1_g310.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.7e-1889141456
                                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                + +++ eq+++Le+ Fe+ +++  e++ +LAk lgL+ rq+ +WFqNrRa++k
  Pav_sc0000766.1_g310.1.mk  89 KKRLNLEQVKTLEKSFEMGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 141
                                4568889*********************************************9 PP
2HD-ZIP_I/II129.99.9e-4287178192
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                ekk+rl+ eqvk+LE+sFe+ +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lk+++dalk++n+ L++++
  Pav_sc0000766.1_g310.1.mk  87 EKKKRLNLEQVKTLEKSFEMGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKKKFDALKADNDVLQAHN 170
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLreelk 92 
                                ++L++el 
  Pav_sc0000766.1_g310.1.mk 171 NKLQAELV 178
                                ****9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MMAFPPCHSF MFQTHEDPDL HLANSSSLNN LPSCPPQHFH GGGVPFMMKR SLSFSGVENN  60
KCHHHEEVGL HGGGEDYLSD DGSQIGEKKK RLNLEQVKTL EKSFEMGNKL EPERKMQLAK  120
ALGLQPRQIA IWFQNRRARW KTKQLEKDYD VLKKKFDALK ADNDVLQAHN NKLQAELVAM  180
KSKDSNDAGL NNNLKKETDQ GSWSNGSENS SDHHHHHHLN LDISRTPATT NSSPSNSQQI  240
NGKNLFQSSL RPTSITQLLQ GSSRSDLQCL KVDQMIQDEN LCSMFNGIDQ EQQQGYWPWP  300
EQHHFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136144RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.12e-76HD-ZIP family protein