PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000740.1_g480.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | NF-YC | ||||||||
Protein Properties | Length: 237aa MW: 26037.2 Da PI: 5.2473 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 179.2 | 3.7e-56 | 49 | 153 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaa 81 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+diaa Pav_sc0000740.1_g480.1.mk 49 QLQMFWTYQrhdIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAA 132 89*****999999*********************************************************************** PP NF-YC 82 avtrtdifdflvdivprdelk 102 a+trtdifdflvdivprde+k Pav_sc0000740.1_g480.1.mk 133 AITRTDIFDFLVDIVPRDEIK 153 ******************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence |
MDTNPNTTTT TTTPNPTQQQ QQAQSSYPPT QSSVPAPPFH HLLQQQQQQL QMFWTYQRHD 60 IEQVNDFKNH QLPLARIKKI MKADEDVRMI SAEAPVLFAK ACELFILELT IRSWLHAEEN 120 KRRTLQKNDI AAAITRTDIF DFLVDIVPRD EIKDEAVGLG GMVGATASGV PYYYPPMGQP 180 AGGPGGMMIG RPAVDPAAVY GVQPPSQAWQ SVWQTAADDG SYGSGGSSGQ GNLDGQR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 128 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 1e-86 | NF-YC family protein |