PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000740.1_g280.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

SBP

Protein Properties

Length: 401aa MW: 43899.8 Da PI: 8.1034

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000740.1_g280.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.8	2.3e-41	94	170	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls +++yhrrhkvCe hsk+p+v+++g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ Pav_sc0000740.1_g280.1.mk 94 CLVDGCNSDLSVCRDYHRRHKVCELHSKTPQVTINGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 170 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MDWNLKAPSW DLTELEQETF SNLGTVDGSS SFGDHRTIKG NFSVDLKLGQ LGDSGNNELV 60 DMLKEAGGPK TTSSPSGPSK RSRAAYSGSQ TVSCLVDGCN SDLSVCRDYH RRHKVCELHS 120 KTPQVTINGQ KQRFCQQCSR FHSLEEFDEG KRSCRKRLDG HNRRRRKPQP EPLSRSGSYL 180 SSYQGTQLLP FSSSLVYPST TVVHPTWAGV VKAEADTGLH NQHLQLPLID KQNMFLGSST 240 STSSSYKGGK QFSLFQSSPL HNQTSHHGAS VCQPLLNTIS FAETGGGAKS KVFCDRLTTQ 300 IHDSDCALSL LSSPQTQQTS EIGLRHMVQQ PNSISLMQQR LGPGSLHGNN GIEPMDSVLV 360 SNGSEANVHC PGMFHIGSDG SLGNNQQHQH QAPQTLPFHW Q

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MDWNLKAPSW DLTELEQETF SNLGTVDGSS SFGDHRTIKG NFSVDLKLGQ LGDSGNNELV  60
DMLKEAGGPK TTSSPSGPSK RSRAAYSGSQ TVSCLVDGCN SDLSVCRDYH RRHKVCELHS  120
KTPQVTINGQ KQRFCQQCSR FHSLEEFDEG KRSCRKRLDG HNRRRRKPQP EPLSRSGSYL  180
SSYQGTQLLP FSSSLVYPST TVVHPTWAGV VKAEADTGLH NQHLQLPLID KQNMFLGSST  240
STSSSYKGGK QFSLFQSSPL HNQTSHHGAS VCQPLLNTIS FAETGGGAKS KVFCDRLTTQ  300
IHDSDCALSL LSSPQTQQTS EIGLRHMVQQ PNSISLMQQR LGPGSLHGNN GIEPMDSVLV  360
SNGSEANVHC PGMFHIGSDG SLGNNQQHQH QAPQTLPFHW Q

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	168	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-74	SBP family protein