PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000704.1_g110.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | GRAS | ||||||||
Protein Properties | Length: 438aa MW: 48239 Da PI: 5.5317 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 371.9 | 8.2e-114 | 97 | 417 | 1 | 334 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 lv+lL++cAe v+ gdl+la +l++++++l + ++ + ++a yf AL++r+++ ++ +s e+ ++ Pav_sc0000704.1_g110.1.mk 97 LVHLLVTCAESVQRGDLALAGSLIENMQTLltRVNTSCGIGKVAGYFIDALSRRIFS------HQGVAS------AHENELLYH 168 68***************************954444446899***************9......222222......334556789 PP GRAS 83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLa 166 +f+e++P+lkf+h+taNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g rLa Pav_sc0000704.1_g110.1.mk 169 YFYEACPYLKFAHFTANQAILEAFQGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLA 252 9*********************************************************************************** PP GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250 ++A++++v+f f+ ++a+rled+++++L+v+p+Ea+aVn+++qlhrll ++ + +s+++ +L +++l+Pk+v+vveqeadhn+ Pav_sc0000704.1_g110.1.mk 253 ELARSVNVRFAFRGVAASRLEDVKPWMLQVSPKEAVAVNSIMQLHRLLGSDPNRNSPIEMMLGWIRNLNPKIVTVVEQEADHNK 336 ************************************************************************************ PP GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334 + Fl+rf+eal+yys++fdslea + + ++ + +++++rei+nvv+cega+r+erhe l+kWr+rl++aGF+p++l+++a Pav_sc0000704.1_g110.1.mk 337 TGFLDRFTEALYYYSTMFDSLEAC---AMQPEKALAEMYIQREICNVVCCEGAARVERHEPLGKWRARLGQAGFRPLHLGSNAF 417 *********************999...467777888899*****************************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence |
MSAVISVLHY TSSSLLLASD AVLYNPSDLA TWVDSLLSEF NHQPLISLPS DLDFPDAIIN 60 PTDLPNDTWT EPLPPPQQQQ HQLTVVTAME EDSGIRLVHL LVTCAESVQR GDLALAGSLI 120 ENMQTLLTRV NTSCGIGKVA GYFIDALSRR IFSHQGVASA HENELLYHYF YEACPYLKFA 180 HFTANQAILE AFQGHDCVHV IDFNLMHGLQ WPALIQALAL RPGGPPLLRL TGIGPPSPDG 240 RDSLREIGLR LAELARSVNV RFAFRGVAAS RLEDVKPWML QVSPKEAVAV NSIMQLHRLL 300 GSDPNRNSPI EMMLGWIRNL NPKIVTVVEQ EADHNKTGFL DRFTEALYYY STMFDSLEAC 360 AMQPEKALAE MYIQREICNV VCCEGAARVE RHEPLGKWRA RLGQAGFRPL HLGSNAFGSS 420 GETGAVGEVE GSAGTSRV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 1e-106 | GRAS family protein |