PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000700.1_g510.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

NF-YC

Protein Properties

Length: 1714aa MW: 193711 Da PI: 6.1876

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000700.1_g510.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	172.7	3.9e-54	1532	1635	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdi 79 ql+sfw++q i+k+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+di Pav_sc0000700.1_g510.1.mk 1532 QLQSFWANQyqeIDKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDI 1613 89****998999**************************************************************** PP NF-YC 80 aaavtrtdifdflvdivprdel 101 aaa+trtdifdflvdivpr++l Pav_sc0000700.1_g510.1.mk 1614 AAAITRTDIFDFLVDIVPREDL 1635 *****************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 1714 aa Download sequence
MTLQTSKRKL KRLRTPLPIV VKLQRPVKSK LGARALLLLA LRSLRNQREG MGSQNPINSE 60 RLRTSWTLPM ERYFIDLMLD QVHRGNRMGH TFNKQAWNDM LLMFNANFGS PYDVNILKSH 120 YTSLWKQFND IKNLLDQNGF SWDNTRQMVI ADRYAWDAYV KVQPDAQFYR NKALMTFNDL 180 CLIYAHTKAD GRYSLSSHDI DFDDDIQGMT DGVGMNSPTL APGPVPPPAS KVQTNTDWKP 240 PMDRFFLKLM LDQLGKGSKT NNSFKKQAWK DMVTLFNAKF GSQYRKSFLK QLYKKLLKYY 300 TDVRSILAIK GFYWDEKEQM IVADDDVWDN YIKALPDARL YRKKPLLNYQ DLNLIYGNEI 360 SNVLRSHLHE GTNSEDDILQ YMTGEEREGH SVYGNGHLAS FEDLDSEGQD LMIGEESEDT 420 QIHGNDDFSR TDWTPPMDRF LIDLMLKQLQ KVNKIDYSFD DQAWIDVLVL FKERFGLQQD 480 KDLLRRRYKS LEKQYHDTKD LLDQRGFWWD DTQQMVTAYD DIWDAYIKEH PDAESYRTKS 540 KPNYNDLCLI YGKSKSGERC NQSGQAMGCN GDAAKYNHSY HWRTDWTPPM DRYFIDLMLE 600 QVRNGSMVNY KFSRLAWTEM VSKFRAEFGS QHDKDVLKSR FLNLRKQFNG MKALLDQSGF 660 AWDEMQHMVT ADDHLWDAYV KEHPDAQSYC NRTLPNFNDL YLIYGNGDIF KRESTSSHTM 720 DAMDDDLGVN LGDETQQTIS TEDDVWEAYI KEHPYPIACA NRILDSYNDL TKIYGNGARD 780 GRSSCFGRNI EKMEKMGINM MFGDSPAMEY EISDQRKKRK PAASSTSASK RAQRIIKEEI 840 QEPLDEKPHI VKGLVGDEVD KDCCSIERIV AALETVPGID DELFLEASLI LEDDKKAKMF 900 VAMDVAARKK WLYRKLRRFL ITTPAKNPPC SSTTITHSNG LFNYLYLHFC LFSQNPFFSL 960 SSLSIILLLL FYILIKTAQD HFSLVTTKLT FSLNLTPSMA AVTLLALGNG APDVFASVAA 1020 VRTGQYRTGF GAILSAGTFV SAFVVGFVAI YAAPFSLNPA PFVRDVLFYL TAALFLFYVY 1080 LSAEIYLWQA VGFVGFYLFF VGLVFWMDLG LGAGGKKSRV EAGVVGDGEI QRGLVAPDFE 1140 IGQVSENSED GKPSFGLRRA LVMISKAWEL PVSVLLKLTI PQAAPSEWSR FYTSANIALC 1200 PLALLYACNS FMPFNHPVVF LLSDTHLPLW FVVLLASSPL ALLYYIVEKD PPKTEQMPVL 1260 LIAFVMSVFW ISTTAGELLN CLAALGSLLE LPPALLGLTV LAWGNSVGDL VADVALAKAG 1320 HPAMAMAGCF AGPMFNMLVG LGTALVIQTY NVYPEVYELQ FHMDSGCLGS GGFVLLVSML 1380 FLWQLVWLLP SFQDDSLSIE IGSTIEQLHT TGDNLQLPNG VSFLDPNYIS TGINALASAR 1440 IMALVPLGQV AMDPQGHNQP QSMGMVGSGA HLTYGTNPYQ HNQMVGSPNP GSVAGTVGAI 1500 QSTSQPAGGQ LAQHQLAYQH IHQQQQQQLQ QQLQSFWANQ YQEIDKVTDF KNHSLPLARI 1560 KKIMKADEDV RMISAEAPVI FARACEMFIL ELTLRSWNHT EENKRRTLQK NDIAAAITRT 1620 DIFDFLVDIV PREDLKDEVL ASIPRGTVSV GGPADALPYC YMPPQHAPQV GAPGMIMGKP 1680 MMDPSMYAQQ SHPYMGQPMW QQAPEQQQQS PSDH

Sequence ? help Back to Top

Protein Sequence Length: 1714 aa Download sequence

MTLQTSKRKL KRLRTPLPIV VKLQRPVKSK LGARALLLLA LRSLRNQREG MGSQNPINSE  60
RLRTSWTLPM ERYFIDLMLD QVHRGNRMGH TFNKQAWNDM LLMFNANFGS PYDVNILKSH  120
YTSLWKQFND IKNLLDQNGF SWDNTRQMVI ADRYAWDAYV KVQPDAQFYR NKALMTFNDL  180
CLIYAHTKAD GRYSLSSHDI DFDDDIQGMT DGVGMNSPTL APGPVPPPAS KVQTNTDWKP  240
PMDRFFLKLM LDQLGKGSKT NNSFKKQAWK DMVTLFNAKF GSQYRKSFLK QLYKKLLKYY  300
TDVRSILAIK GFYWDEKEQM IVADDDVWDN YIKALPDARL YRKKPLLNYQ DLNLIYGNEI  360
SNVLRSHLHE GTNSEDDILQ YMTGEEREGH SVYGNGHLAS FEDLDSEGQD LMIGEESEDT  420
QIHGNDDFSR TDWTPPMDRF LIDLMLKQLQ KVNKIDYSFD DQAWIDVLVL FKERFGLQQD  480
KDLLRRRYKS LEKQYHDTKD LLDQRGFWWD DTQQMVTAYD DIWDAYIKEH PDAESYRTKS  540
KPNYNDLCLI YGKSKSGERC NQSGQAMGCN GDAAKYNHSY HWRTDWTPPM DRYFIDLMLE  600
QVRNGSMVNY KFSRLAWTEM VSKFRAEFGS QHDKDVLKSR FLNLRKQFNG MKALLDQSGF  660
AWDEMQHMVT ADDHLWDAYV KEHPDAQSYC NRTLPNFNDL YLIYGNGDIF KRESTSSHTM  720
DAMDDDLGVN LGDETQQTIS TEDDVWEAYI KEHPYPIACA NRILDSYNDL TKIYGNGARD  780
GRSSCFGRNI EKMEKMGINM MFGDSPAMEY EISDQRKKRK PAASSTSASK RAQRIIKEEI  840
QEPLDEKPHI VKGLVGDEVD KDCCSIERIV AALETVPGID DELFLEASLI LEDDKKAKMF  900
VAMDVAARKK WLYRKLRRFL ITTPAKNPPC SSTTITHSNG LFNYLYLHFC LFSQNPFFSL  960
SSLSIILLLL FYILIKTAQD HFSLVTTKLT FSLNLTPSMA AVTLLALGNG APDVFASVAA  1020
VRTGQYRTGF GAILSAGTFV SAFVVGFVAI YAAPFSLNPA PFVRDVLFYL TAALFLFYVY  1080
LSAEIYLWQA VGFVGFYLFF VGLVFWMDLG LGAGGKKSRV EAGVVGDGEI QRGLVAPDFE  1140
IGQVSENSED GKPSFGLRRA LVMISKAWEL PVSVLLKLTI PQAAPSEWSR FYTSANIALC  1200
PLALLYACNS FMPFNHPVVF LLSDTHLPLW FVVLLASSPL ALLYYIVEKD PPKTEQMPVL  1260
LIAFVMSVFW ISTTAGELLN CLAALGSLLE LPPALLGLTV LAWGNSVGDL VADVALAKAG  1320
HPAMAMAGCF AGPMFNMLVG LGTALVIQTY NVYPEVYELQ FHMDSGCLGS GGFVLLVSML  1380
FLWQLVWLLP SFQDDSLSIE IGSTIEQLHT TGDNLQLPNG VSFLDPNYIS TGINALASAR  1440
IMALVPLGQV AMDPQGHNQP QSMGMVGSGA HLTYGTNPYQ HNQMVGSPNP GSVAGTVGAI  1500
QSTSQPAGGQ LAQHQLAYQH IHQQQQQQLQ QQLQSFWANQ YQEIDKVTDF KNHSLPLARI  1560
KKIMKADEDV RMISAEAPVI FARACEMFIL ELTLRSWNHT EENKRRTLQK NDIAAAITRT  1620
DIFDFLVDIV PREDLKDEVL ASIPRGTVSV GGPADALPYC YMPPQHAPQV GAPGMIMGKP  1680
MMDPSMYAQQ SHPYMGQPMW QQAPEQQQQS PSDH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1605	1611	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	9e-76	NF-YC family protein