PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000689.1_g540.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YA
Protein Properties Length: 344aa    MW: 38110.5 Da    PI: 9.453
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000689.1_g540.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.57.8e-32185241158
                  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                dep+YVNaKQy++Il+RRq Rakle+++kl +k rkpylheSRh hAl+R+RgsgGrF
  Pav_sc0000689.1_g540.1.mk 185 DEPIYVNAKQYRAILRRRQYRAKLEAQNKL-IKIRKPYLHESRHVHALKRARGSGGRF 241
                                79****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    
MQNLYKQNSD IGSAHSTFPF IVGSSSWENS TETHVQQSTS KSLIFKMGVP LQNCHNRKQS  60
GIHFHDQDSS STQSTGQSHS EVDSMKEGNP CGEGIVSAQS GYNERQGKPV GGHLKSLSSM  120
ASQGFVFPSQ LDFSHPMGHI PFHYAEPYFG SVLAAACGPQ ATIHHPQVMG ITPARVPLPL  180
DLTEDEPIYV NAKQYRAILR RRQYRAKLEA QNKLIKIRKP YLHESRHVHA LKRARGSGGR  240
FLNMKKVQDS KPNTTNHRVD VSGSAQLHLT RNMSESEVNE PDNYRDGAST TSCSEVTSTS  300
NSDNIFPRQD FRFSGYPSHI GGTMQVPFVD VRGGGNQHHI SLLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.12e-64NF-YA family protein