PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000677.1_g320.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 404aa MW: 46925.7 Da PI: 6.4499

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000677.1_g320.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.7	1.6e-22	48	134	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 +fYn+YA+e+GFsvr +skks ++ge++++++vC+keg+ ++e++ +r+r + r +Cka+l v k+k g ++vt +e+ Pav_sc0000677.1_g320.1.br 48 DFYNQYAREAGFSVRSYSSKKS-KDGEVIRKEYVCNKEGSWSTETSG--AVKRRRGVGRESCKARLIVVKSKYGGYVVTIFEEA 128 6***************9999.8889***********99988..8889999************************ PP FAR1 85 HnHela 90 H+H+++ Pav_sc0000677.1_g320.1.br 129 HTHPMT 134 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MEANNGILVH METDSETNPS VSIFYPQVIG ELTPFQGQQF ETLEEVYDFY NQYAREAGFS 60 VRSYSSKKSK DGEVIRKEYV CNKEGSWSTE TSGAVKRRRG VGRESCKARL IVVKSKYGGY 120 VVTIFEEAHT HPMTTPRRRH LLKSHRRISG VDQLVTQQLI SVNVSTHQQY DILATQAGGI 180 ENVGFTQQDM YNSNRDRRMK IKGHDGEMLF DHFMNEQEKN PGFIFKVETN IEHNITRCFW 240 ADAISRQSYK FYGDAVIFDT TYNTNRYCMI FAPIMGVNNH GQTIIFSGAF LSDETADSFI 300 WLFREFFRAM PGDAPKIIIT DQDPAMTKAI SEALPNTFHR YCSWHILNKF SDKPECILHY 360 QQFRECVWDS ESRDEFDLRW KRIVEDSGLN EDTWLQSIFN IQYS

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MEANNGILVH METDSETNPS VSIFYPQVIG ELTPFQGQQF ETLEEVYDFY NQYAREAGFS  60
VRSYSSKKSK DGEVIRKEYV CNKEGSWSTE TSGAVKRRRG VGRESCKARL IVVKSKYGGY  120
VVTIFEEAHT HPMTTPRRRH LLKSHRRISG VDQLVTQQLI SVNVSTHQQY DILATQAGGI  180
ENVGFTQQDM YNSNRDRRMK IKGHDGEMLF DHFMNEQEKN PGFIFKVETN IEHNITRCFW  240
ADAISRQSYK FYGDAVIFDT TYNTNRYCMI FAPIMGVNNH GQTIIFSGAF LSDETADSFI  300
WLFREFFRAM PGDAPKIIIT DQDPAMTKAI SEALPNTFHR YCSWHILNKF SDKPECILHY  360
QQFRECVWDS ESRDEFDLRW KRIVEDSGLN EDTWLQSIFN IQYS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-74	FAR1 family protein