PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000652.1_g790.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GRF

Protein Properties

Length: 452aa MW: 49626.1 Da PI: 8.259

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000652.1_g790.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.6	5.3e-24	134	178	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep+rC+RtDGKkWRCsr+v +++k+CErH h++r rsrk++e+ Pav_sc0000652.1_g790.1.mk 134 DPEPWRCKRTDGKKWRCSRDVAPDQKYCERHAHKSRPRSRKPVES 178 79****************************************986 PP
2	QLQ	54	5e-19	73	106	2	35
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 +FT+aQ ++L++Q ++yKy+++++PvPp+Ll++i Pav_sc0000652.1_g790.1.mk 73 PFTPAQREELERQTMIYKYMMSSAPVPPHLLVPI 106 8********************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MGKRNGFVVA SEKGTAEETT DNPVTSCISD IYNAVGSDFG SVVPKSLQQP YSDRSLSFSP 60 SVGGMVNVNV RLPFTPAQRE ELERQTMIYK YMMSSAPVPP HLLVPIAKNP SNVAHLYPNL 120 VRGSLELGFS SNSDPEPWRC KRTDGKKWRC SRDVAPDQKY CERHAHKSRP RSRKPVESNP 180 NFINNNTTTT TRMRSPRSNF VKNNICNQPS PFSTNMVSPT APSHAQPRSM AWFMNGETPT 240 APTAGGSNQE WEQMMQFKLG LKSCHTKCNT DVDVSKQQNE NSFNLYREYT GESQGLQTQR 300 PSHDQYGLLL SPKLAHLEGA LNSNQTQHTR HFIDAWSTTT ERDSSIGEIG NRGYVSSNQK 360 LPFSSLTLSM SRGNETNEES DNTQMGLGIL GSERENVGDL KSQWMNPLSC MSSPPGGPLA 420 EALCLGIASS TRATSSNGCT SGSTSSGDGV YT

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MGKRNGFVVA SEKGTAEETT DNPVTSCISD IYNAVGSDFG SVVPKSLQQP YSDRSLSFSP  60
SVGGMVNVNV RLPFTPAQRE ELERQTMIYK YMMSSAPVPP HLLVPIAKNP SNVAHLYPNL  120
VRGSLELGFS SNSDPEPWRC KRTDGKKWRC SRDVAPDQKY CERHAHKSRP RSRKPVESNP  180
NFINNNTTTT TRMRSPRSNF VKNNICNQPS PFSTNMVSPT APSHAQPRSM AWFMNGETPT  240
APTAGGSNQE WEQMMQFKLG LKSCHTKCNT DVDVSKQQNE NSFNLYREYT GESQGLQTQR  300
PSHDQYGLLL SPKLAHLEGA LNSNQTQHTR HFIDAWSTTT ERDSSIGEIG NRGYVSSNQK  360
LPFSSLTLSM SRGNETNEES DNTQMGLGIL GSERENVGDL KSQWMNPLSC MSSPPGGPLA  420
EALCLGIASS TRATSSNGCT SGSTSSGDGV YT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	3e-48	GRF family protein