PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000652.1_g1140.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 413aa    MW: 46285 Da    PI: 7.3705
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000652.1_g1140.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.21.2e-31104208199
                                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                                 f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+
  Pav_sc0000652.1_g1140.1.mk 104 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDI 186
                                 89***************************966778999********************************************* PP

                                 EEEEE-.SS.SEE..EEEEE-S CS
                          B3  80 vvFkld.gr.sefelvvkvfrk 99 
                                 v F++  g+  + +l++ ++r+
  Pav_sc0000652.1_g1140.1.mk 187 VSFQRGlGElGKDRLFIDWRRR 208
                                 ****777899999999999997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    
MNFGSAARDG GFSTEDENNM VRGKLPFSYA SSPSSSTSSA QYNKTTSIAT LVPSAHYNRA  60
GYDDGPDTKL ELMDSSPRDR DNNEEDDGSR REENPIAIER EHMFDKVVTP SDVGKLNRLV  120
IPKQHAEKYF PLDSSTNEKG LLLNFEDRNG KPWRFRYSYW NSSQSYVMTK GWSRFVKEKK  180
LDAGDIVSFQ RGLGELGKDR LFIDWRRRPD VPDPIHHHHP LHPHHHHYQP NFAIAHHHQQ  240
QQQHFSWNHH QRSVPWSPLL MRPPPGGGLV PRDHLQHLSQ QINYSMNMHH PYRNTGTSST  300
AGGGSGGSGG SSYAAKRLRL FGVNMDCPIS ESDHECDILS SSSSQYHHAT MASPSHQLSP  360
SSQPPLQLRL FDGTPLPSTT TTTTSASTTT DFLSIGGKHQ ASSPFSMSLD FDV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.15e-69B3 family protein