PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000648.1_g310.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 562aa MW: 65131.3 Da PI: 8.3429

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000648.1_g310.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.5	9.1e-18	413	483	19	89
FAR1 19 skkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++s+ +++i +r++ C+k+g+ + +++ + rr+r++tr gCka++ vk +k+gkw+vt+++++H+H+l Pav_sc0000648.1_g310.1.mk 413 CRRSDVDKRILSRRLSCNKQGRYVKPRDQVRPVRRPRPSTREGCKAMMLVKVNKSGKWVVTRVVKDHTHPL 483 57888999************999999999************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MQKLARTSVF RSLRLLKSHN RLNIEKPRFP LEGHRWVHSA PCVNAEHKAA EPLGNSKEGT 60 VAKDTGSATV KRKKLKGKRA VVRWLKFFRW KKKKDYKRMT AEEKILHKLR KAQRKEERLV 120 EALKKIEPSE TSETNHDPEI LTPEEHFFFL KMGLKCKNYV PVGRRGIYQG VILNMHLHWK 180 KHQTLQVVVK TFSPEEVKEI ASELARLTGG IVLGIHEEYT IIMYRGKNYS QPPTEIMSPR 240 VTLSRKKALD KSKYKDGLRA VRKYIPKLEQ DLDLLRAQAK RNPEIETDAI EETQETDIDS 300 VDSRSSSNFK LEPSDKLKEI IGRSKGGSED DLVTDSEMPS DSEDLSDIFE TDSDKETEEK 360 AERPLYLEEF EKFPVESDGE PEDFEDHLRQ ISMDSKKAKS VNEDADLPNF DECRRSDVDK 420 RILSRRLSCN KQGRYVKPRD QVRPVRRPRP STREGCKAMM LVKVNKSGKW VVTRVVKDHT 480 HPLIVSSGIS MDERDMKIEQ LTMELEREDQ LCELYHGLLL TLLDNVEEQT ELISMKVSGI 540 VNDVREFETE VERLPQNELD DN

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MQKLARTSVF RSLRLLKSHN RLNIEKPRFP LEGHRWVHSA PCVNAEHKAA EPLGNSKEGT  60
VAKDTGSATV KRKKLKGKRA VVRWLKFFRW KKKKDYKRMT AEEKILHKLR KAQRKEERLV  120
EALKKIEPSE TSETNHDPEI LTPEEHFFFL KMGLKCKNYV PVGRRGIYQG VILNMHLHWK  180
KHQTLQVVVK TFSPEEVKEI ASELARLTGG IVLGIHEEYT IIMYRGKNYS QPPTEIMSPR  240
VTLSRKKALD KSKYKDGLRA VRKYIPKLEQ DLDLLRAQAK RNPEIETDAI EETQETDIDS  300
VDSRSSSNFK LEPSDKLKEI IGRSKGGSED DLVTDSEMPS DSEDLSDIFE TDSDKETEEK  360
AERPLYLEEF EKFPVESDGE PEDFEDHLRQ ISMDSKKAKS VNEDADLPNF DECRRSDVDK  420
RILSRRLSCN KQGRYVKPRD QVRPVRRPRP STREGCKAMM LVKVNKSGKW VVTRVVKDHT  480
HPLIVSSGIS MDERDMKIEQ LTMELEREDQ LCELYHGLLL TLLDNVEEQT ELISMKVSGI  540
VNDVREFETE VERLPQNELD DN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	94	KRKKLKGKRAVVRWLKFFRWKKKK
2	71	97	KRKKLKGKRAVVRWLKFFRWKKKKDYK
3	72	95	KRKKLKGKRAVVRWLKFFRWKKKK
4	89	95	RWKKKKD
5	91	117	KRKKLKGKRAVVRWLKFFRWKKKKDYK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-31	FAR1 family protein