PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000618.1_g400.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

TCP

Protein Properties

Length: 417aa MW: 46574 Da PI: 8.1931

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000618.1_g400.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	136.7	2e-42	131	279	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssas 71 + kkdrhski T++g+RdRRvRls+++a++fFdLqd LGfdk+skt+eWLl+++ +aik+l s +s+s Pav_sc0000618.1_g400.1.mk 131 PMKKDRHSKIFTAQGLRDRRVRLSINVARQFFDLQDLLGFDKASKTLEWLLTKSRKAIKQLGTRnkhltcststgrskSLTSSS 214 679********************************************************88889999998887777666667 PP TCP 72 ec.eaesssssasnsssgkaaksaa.kskksqksaas.alnlakesrakarararertrekmrik 133 ec +++ +s +++ ++ ++++k+ + kk+ k+++s + +k+srakarararertrek + + Pav_sc0000618.1_g400.1.mk 215 ECdDDDVDSDTNEVENVASKEKEVMlMMKKKMKESESaNVYGMKDSRAKARARARERTREKLMCT 279 88422222222223333355555554444444444440444456**************97655 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MFSSCSSNIN STSVSPFQPY FPLSSSNYHP PPPPPPPLPC VNQEPCSGDI FLHHNIQGYP 60 ISGQFPLHNN ALMAPPLPQS LTHLGVSSNT VPPSINADDH HPYHSHYGAI NNGNIFPHFL 120 HSSREDIVAP PMKKDRHSKI FTAQGLRDRR VRLSINVARQ FFDLQDLLGF DKASKTLEWL 180 LTKSRKAIKQ LGTRNKHLTC STSTGRSKSL TSSSECDDDD VDSDTNEVEN VASKEKEVML 240 MMKKKMKESE SANVYGMKDS RAKARARARE RTREKLMCTT RSGPQMLNQL KLFNELDHHQ 300 SNNNCETMSS SSAKANIGDH PENQELGSLL ANQLAHHHEE DPSVHVIKRN KLKQYSSGYS 360 NYNQQKYLNV VSAESTDQSS NSHIQFPNAF QNWDTNGAFP CPNIHCAITS INLSTGN

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MFSSCSSNIN STSVSPFQPY FPLSSSNYHP PPPPPPPLPC VNQEPCSGDI FLHHNIQGYP  60
ISGQFPLHNN ALMAPPLPQS LTHLGVSSNT VPPSINADDH HPYHSHYGAI NNGNIFPHFL  120
HSSREDIVAP PMKKDRHSKI FTAQGLRDRR VRLSINVARQ FFDLQDLLGF DKASKTLEWL  180
LTKSRKAIKQ LGTRNKHLTC STSTGRSKSL TSSSECDDDD VDSDTNEVEN VASKEKEVML  240
MMKKKMKESE SANVYGMKDS RAKARARARE RTREKLMCTT RSGPQMLNQL KLFNELDHHQ  300
SNNNCETMSS SSAKANIGDH PENQELGSLL ANQLAHHHEE DPSVHVIKRN KLKQYSSGYS  360
NYNQQKYLNV VSAESTDQSS NSHIQFPNAF QNWDTNGAFP CPNIHCAITS INLSTGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	5e-29	TCP family protein