PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000600.1_g670.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 584aa MW: 67019.3 Da PI: 6.2163

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000600.1_g670.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100	2.5e-31	81	168	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fYn+YA+++GFs+r+s ++s+r+g+i++r+ vCs+eg+r++ ++ +++r+r++tr+gCka+++vkk+++g+w v+kl++eH Pav_sc0000600.1_g670.1.mk 81 FYNSYARRIGFSTRVSVYQRSRRDGSIICRQVVCSREGFRRDGGEN--RSKRQRTVTRVGCKAQMTVKKQSSGRWAVSKLVKEH 162 9***************************************9988..999***************************** PP FAR1 86 nHelap 91 nHel+p Pav_sc0000600.1_g670.1.mk 163 NHELVP 168 **86 PP

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence
MDFEPLNIEN EAVEFDMGGS GEDDATALDL EHPDDSYDIF DDDLVQSSNS TRSRDDFASG 60 DPNLEPYEGM EFDSEQASRI FYNSYARRIG FSTRVSVYQR SRRDGSIICR QVVCSREGFR 120 RDGGENRSKR QRTVTRVGCK AQMTVKKQSS GRWAVSKLVK EHNHELVPPD KVHCLRSHRH 180 VSAVGQVFPG TRHRFCKWNV LREAQEKLSD IYHSHPTFEA EFQRCINMTE TIDEFESCWE 240 SLLQRYDIGD NEWLQSMYDA RQQWVPVFLR DTFFGEMSVT QGSDNINSYF DGYINASTNI 300 QVLIKQYEKA IATRHEKEVK ADYDTMNISP ILRTPSPMEK QAAKLYTRIV FMKFQEELVE 360 TLAYPATMVD DTGSETVYRV AKFGEDHKVY FVRFNVFEKK SSCSCQMFEF SGIICRHILA 420 VFRVTNVLTL PNHYILKRWT KSAKSGVVWD EHTLGLPNDS QDSSAARYDN LRREAIKYVE 480 EGAESVRVYT VAMDALHEAA SEVTAAKKHG LGVVQSTSIN CSQQLQSCTV DQDKKIKELA 540 AELDIASQQC EAYRAKLLAI LKDMEEQKLK ISVNVRNVRL NLRS

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence

MDFEPLNIEN EAVEFDMGGS GEDDATALDL EHPDDSYDIF DDDLVQSSNS TRSRDDFASG  60
DPNLEPYEGM EFDSEQASRI FYNSYARRIG FSTRVSVYQR SRRDGSIICR QVVCSREGFR  120
RDGGENRSKR QRTVTRVGCK AQMTVKKQSS GRWAVSKLVK EHNHELVPPD KVHCLRSHRH  180
VSAVGQVFPG TRHRFCKWNV LREAQEKLSD IYHSHPTFEA EFQRCINMTE TIDEFESCWE  240
SLLQRYDIGD NEWLQSMYDA RQQWVPVFLR DTFFGEMSVT QGSDNINSYF DGYINASTNI  300
QVLIKQYEKA IATRHEKEVK ADYDTMNISP ILRTPSPMEK QAAKLYTRIV FMKFQEELVE  360
TLAYPATMVD DTGSETVYRV AKFGEDHKVY FVRFNVFEKK SSCSCQMFEF SGIICRHILA  420
VFRVTNVLTL PNHYILKRWT KSAKSGVVWD EHTLGLPNDS QDSSAARYDN LRREAIKYVE  480
EGAESVRVYT VAMDALHEAA SEVTAAKKHG LGVVQSTSIN CSQQLQSCTV DQDKKIKELA  540
AELDIASQQC EAYRAKLLAI LKDMEEQKLK ISVNVRNVRL NLRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-162	FAR1 family protein