PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000591.1_g350.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 741aa MW: 86663.6 Da PI: 8.6655

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000591.1_g350.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.3	6.7e-20	6	112	1	88
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkakl 66 ++Y+eY+++ GF +r+++s+k+ +r +e+t+r+fvC egk +++++ +++ ++ ++ ++gCka++ Pav_sc0000591.1_g350.1.br 6 NYYEEYGRQEGFWIRTRSSSKTrRRLDEVTSRQFVCAHEGKYVPKNTSqkaseendernlseienMKRTGKNCSTVKCGCKASM 89 69***********999888867889***********9888877889999999999998666667788999****** PP FAR1 67 kvkkek.dgkwevtkleleHnHe 88 ++k+++ ++kw+v++++ HnH+ Pav_sc0000591.1_g350.1.br 90 RIKLDRwSNKWKVSSFQDSHNHK 112 ********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 741 aa Download sequence
MEEARNYYEE YGRQEGFWIR TRSSSKTRRR LDEVTSRQFV CAHEGKYVPK NTSQKASEEN 60 DERNLSEIEN MKRTGKNCST VKCGCKASMR IKLDRWSNKW KVSSFQDSHN HKPVTPERRM 120 KMKSNRVMPK AAKILTETFH EENLPIAKVP SILGGPHIGF NNRDCYNHLR NVRHRQLDGG 180 DAQSVLTYFR KKQAENPQIC FYAIQCDENG RAANFFWVDA RSRMAYHYFG DVVTFDTTYR 240 TNKYDMPFAP FTGVNHHLQS IQFGCALLQD ETEVTFLWLF ETWLEAMGGR HPVSIITDQD 300 LAMKGAIAKI FPNTRHRLCL WHIKKKFAEK LSHVYFKKSK FKIQMKKCIR STYKIEEFEE 360 KWKELMKECE LANDDWLNSL YDIRSSWVPV YNRDIFFAGM NTTGRSEGIN SFFDGFVTPT 420 INLREFVVKY EQALKRIMDR ESDEDFESEH KYRIVNEGEF LLKHAAKFYT RNVFNKFKDE 480 WSKVTLYKVE EIPCDNEYHA YLVKTKLGEH EEFVVKLNLQ TYKGMCECQN FEFVGILCRH 540 LLKVFVRLDI DTLPDHFILP RWRQEANKFR IMDFKSLVTN DGKEESEALR LSHMCHQATK 600 LACIAASSNE AYTTFMEAIN ELSKKLSDNS TQHATIPSST IGDPCSTNID SSQLLLLDPN 660 ISQTKGRKKD NISGSKRIKS GIELAQNKKK RKCALCKKIA QHDKRNCPSN LKRRKNESTN 720 LCNEESEDLC QDMESDDQEY C

Sequence ? help Back to Top

Protein Sequence Length: 741 aa Download sequence

MEEARNYYEE YGRQEGFWIR TRSSSKTRRR LDEVTSRQFV CAHEGKYVPK NTSQKASEEN  60
DERNLSEIEN MKRTGKNCST VKCGCKASMR IKLDRWSNKW KVSSFQDSHN HKPVTPERRM  120
KMKSNRVMPK AAKILTETFH EENLPIAKVP SILGGPHIGF NNRDCYNHLR NVRHRQLDGG  180
DAQSVLTYFR KKQAENPQIC FYAIQCDENG RAANFFWVDA RSRMAYHYFG DVVTFDTTYR  240
TNKYDMPFAP FTGVNHHLQS IQFGCALLQD ETEVTFLWLF ETWLEAMGGR HPVSIITDQD  300
LAMKGAIAKI FPNTRHRLCL WHIKKKFAEK LSHVYFKKSK FKIQMKKCIR STYKIEEFEE  360
KWKELMKECE LANDDWLNSL YDIRSSWVPV YNRDIFFAGM NTTGRSEGIN SFFDGFVTPT  420
INLREFVVKY EQALKRIMDR ESDEDFESEH KYRIVNEGEF LLKHAAKFYT RNVFNKFKDE  480
WSKVTLYKVE EIPCDNEYHA YLVKTKLGEH EEFVVKLNLQ TYKGMCECQN FEFVGILCRH  540
LLKVFVRLDI DTLPDHFILP RWRQEANKFR IMDFKSLVTN DGKEESEALR LSHMCHQATK  600
LACIAASSNE AYTTFMEAIN ELSKKLSDNS TQHATIPSST IGDPCSTNID SSQLLLLDPN  660
ISQTKGRKKD NISGSKRIKS GIELAQNKKK RKCALCKKIA QHDKRNCPSN LKRRKNESTN  720
LCNEESEDLC QDMESDDQEY C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-141	FAR1 family protein