PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000591.1_g170.1.br | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 173aa MW: 19280 Da PI: 6.3754 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 110.7 | 1.1e-34 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C aCk+lrrkC+ +C++ pyf e+ + +f ++hk+FGasnv++ll++lp ++r +a++++ eA ar++dP+yG+v++i +l Pav_sc0000591.1_g170.1.br 7 PCGACKFLRRKCVIGCIFEPYFSYEEgATHFSVIHKVFGASNVSNLLAHLPLSDRCEAATTIWHEAVARLQDPIYGCVSHIIAL 90 7**********************99979******************************************************** PP DUF260 84 qqqleqlkaelallkee 100 +qq+ +l+a+la lk++ Pav_sc0000591.1_g170.1.br 91 KQQVVNLQAQLAFLKDQ 107 ************99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence |
MASSRSPCGA CKFLRRKCVI GCIFEPYFSY EEGATHFSVI HKVFGASNVS NLLAHLPLSD 60 RCEAATTIWH EAVARLQDPI YGCVSHIIAL KQQVVNLQAQ LAFLKDQAYA VANPNDQSAH 120 DLQAYMEECD LINEIPKCSN YEDLVTSLTL MRANAHINEI PECSNAQSSW RKC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 4e-56 | LBD family protein |