PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000588.1_g490.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 482aa MW: 56244.1 Da PI: 7.2835

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000588.1_g490.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.4	8.7e-27	31	120	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fYneY++++GF++r+++++k+k++g+i++r fvC keg+r ++k++ ++++raetrt C+ak+ +k++k +gk+ v+++ + Pav_sc0000588.1_g490.1.br 31 EFYNEYGRRAGFNIRRDSQNKNKNTGQIISRVFVCCKEGFRPKDKQD-YLTKSSRAETRTCCNAKMSIKLNKsNGKYWVSHFME 113 6****************************************9999.9999****************9******* PP FAR1 84 eHnHela 90 HnH+l+ Pav_sc0000588.1_g490.1.br 114 YHNHPLV 120 ***97 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MSDSVATICE DNLDYKPICD MEFLSEQAAY EFYNEYGRRA GFNIRRDSQN KNKNTGQIIS 60 RVFVCCKEGF RPKDKQDYLT KSSRAETRTC CNAKMSIKLN KSNGKYWVSH FMEYHNHPLV 120 RQECTHMLPS HRRISASQAT EVYLTEESGI PLRQAYELMG RQVGGRESLG YIKQDQKNYL 180 QTKRQRKLAY GEVGSLLKYF QNEALENPSF FYAMQLDCDE QITNIFWADA KMIVDYGQFG 240 DCVCFDTTYK TNEANRPFGV FVGFNHHREI AIFGVALLYN ETANSFIRLF ETFSEAMSKK 300 APKTLFTDQD AAMAKACAHV MSDTYHRLCT WHIMQNAMKH VNSLFRCTCG VRSVLTQFMD 360 YYEEEDEFLV AWDSMLDEYN VRGHLWLEII FDLRKKWAMA YCKWSWSAGV KTTQISESFN 420 ATLKDYLNVD HDVVQFFMHF ERVLNDKRYK ELEAEYALCQ KLPKVTILVS MVVKAGNIYT 480 NI

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MSDSVATICE DNLDYKPICD MEFLSEQAAY EFYNEYGRRA GFNIRRDSQN KNKNTGQIIS  60
RVFVCCKEGF RPKDKQDYLT KSSRAETRTC CNAKMSIKLN KSNGKYWVSH FMEYHNHPLV  120
RQECTHMLPS HRRISASQAT EVYLTEESGI PLRQAYELMG RQVGGRESLG YIKQDQKNYL  180
QTKRQRKLAY GEVGSLLKYF QNEALENPSF FYAMQLDCDE QITNIFWADA KMIVDYGQFG  240
DCVCFDTTYK TNEANRPFGV FVGFNHHREI AIFGVALLYN ETANSFIRLF ETFSEAMSKK  300
APKTLFTDQD AAMAKACAHV MSDTYHRLCT WHIMQNAMKH VNSLFRCTCG VRSVLTQFMD  360
YYEEEDEFLV AWDSMLDEYN VRGHLWLEII FDLRKKWAMA YCKWSWSAGV KTTQISESFN  420
ATLKDYLNVD HDVVQFFMHF ERVLNDKRYK ELEAEYALCQ KLPKVTILVS MVVKAGNIYT  480
NI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-104	FAR1 family protein