PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000586.1_g230.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

ARF

Protein Properties

Length: 698aa MW: 77581.8 Da PI: 6.8876

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000586.1_g230.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.9	1.9e-23	127	227	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k+lt sd++++g +++ +k+a+e+ +++ + +++l +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD Pav_sc0000586.1_g230.1.mk 127 FCKILTASDTSTHGGFSVLRKHATEClppldMIQATPTQELNAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDA 210 99**************************9556666679**************************************** PP EEEEE-SSSEE..EEEEE- CS B3 80 vvFkldgrsefelvvkvfr 98 +vF + +++el+v+v+r Pav_sc0000586.1_g230.1.mk 211 FVFL--RGDNGELRVGVRR 227 ..3489999**98 PP
2	Auxin_resp	101.9	8e-34	253	332	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+ t++ F v+Y+Pr+ s+F++ ++k+++a+++k+svGmRfkm+fe+e+s+err++Gt+vgv dl++ +W++SkWrsLk Pav_sc0000586.1_g230.1.mk 253 ASHALMTRTLFVVYYKPRT--SQFIIGLNKYLEAINNKFSVGMRFKMRFEGEESPERRFTGTIVGVGDLSS-QWSESKWRSLK 332 6899************6..9******************************************777.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence
MAHLECDSSI SRAETGFGGG DLYTELWKLC AGPLVDVPRP GERVFYFPQG HMEQLEASTN 60 QELNQQIPLF NLPSKILCRV VHIHLLAEQE TDEVYAQITL HPEADQSEPT SPDPCLLDPS 120 KPTVHSFCKI LTASDTSTHG GFSVLRKHAT ECLPPLDMIQ ATPTQELNAK DLHGYEWKFK 180 HIFRGQPRRH LLTTGWSTFV TSKRLVAGDA FVFLRGDNGE LRVGVRRLAR QQSHMPSSVI 240 SSQSMQLGVL ATASHALMTR TLFVVYYKPR TSQFIIGLNK YLEAINNKFS VGMRFKMRFE 300 GEESPERRFT GTIVGVGDLS SQWSESKWRS LKIQWDEHAA VQRPERVSPW EIEPFVASAP 360 INLAQPVVKC KRPRPVEISS SEITTNSPAS AFWYHGSTQT VELNQLGGVP EVQSSGSQVV 420 WPLRQKESNS SSYSSSRVYS EGIWPPSPHV NVSLSLFPDL KEGNKNVTTG SVLSSIASRV 480 SSKASSKPSN TLIPGQVGKE KKSDSSDLWL FGYNLTNNSK TVSPPESEPV CKTMSCGGKG 540 PITAAAFEVD QDLDVSKLSK EQKQVISEAS PGDTQGKQGS TLSTRTRTKV QMQGVAVGRA 600 VDLTSLKGYD HLIDELEKMF EIKGELRPLN KWAVVFTDDE NDMMLMGDDQ WLDFCKLVKK 660 IFIYSSDEVQ KMNRCKLQNS SLDCEGTVSV DSEHRCET

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence

MAHLECDSSI SRAETGFGGG DLYTELWKLC AGPLVDVPRP GERVFYFPQG HMEQLEASTN  60
QELNQQIPLF NLPSKILCRV VHIHLLAEQE TDEVYAQITL HPEADQSEPT SPDPCLLDPS  120
KPTVHSFCKI LTASDTSTHG GFSVLRKHAT ECLPPLDMIQ ATPTQELNAK DLHGYEWKFK  180
HIFRGQPRRH LLTTGWSTFV TSKRLVAGDA FVFLRGDNGE LRVGVRRLAR QQSHMPSSVI  240
SSQSMQLGVL ATASHALMTR TLFVVYYKPR TSQFIIGLNK YLEAINNKFS VGMRFKMRFE  300
GEESPERRFT GTIVGVGDLS SQWSESKWRS LKIQWDEHAA VQRPERVSPW EIEPFVASAP  360
INLAQPVVKC KRPRPVEISS SEITTNSPAS AFWYHGSTQT VELNQLGGVP EVQSSGSQVV  420
WPLRQKESNS SSYSSSRVYS EGIWPPSPHV NVSLSLFPDL KEGNKNVTTG SVLSSIASRV  480
SSKASSKPSN TLIPGQVGKE KKSDSSDLWL FGYNLTNNSK TVSPPESEPV CKTMSCGGKG  540
PITAAAFEVD QDLDVSKLSK EQKQVISEAS PGDTQGKQGS TLSTRTRTKV QMQGVAVGRA  600
VDLTSLKGYD HLIDELEKMF EIKGELRPLN KWAVVFTDDE NDMMLMGDDQ WLDFCKLVKK  660
IFIYSSDEVQ KMNRCKLQNS SLDCEGTVSV DSEHRCET

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	371	375	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61830.1	0.0	ARF family protein