PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000583.1_g990.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | GRAS | ||||||||
Protein Properties | Length: 501aa MW: 56372.9 Da PI: 6.693 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 317.8 | 2.3e-97 | 149 | 495 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 l++lL+ecA a+s ++l +a+++L +ls++asp+g + +R++ayf++A+ +r+ +s+ +++ l ++ +a+++ Pav_sc0000583.1_g990.1.mk 149 LITLLFECAVAISVDNLPEAHRMLLELSQMASPYGpSCAERVVAYFAKAMTSRVINSWLGICTPLVNYKS-------IHSAFQV 225 5789*******************************9999**********************976654444.......56899** PP GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLak 167 f+ +sP++kf+h+t NqaIlea+++++r GlQWpaL++ La+R egpp+lR+Tgvg s+e l etg++L++ Pav_sc0000583.1_g990.1.mk 226 FNTISPFIKFAHFTSNQAILEAFHRHDR----------GLQWPALFHILATRMEGPPHLRMTGVGT----SSEILMETGKQLSN 295 *************************986..........****************************....99************ PP GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251 fA++lg++fef++ +++++ d++ ++ +v++gE+laV++ h+l+d +++ + +++l+ +l P++v++veq+++h s+ Pav_sc0000583.1_g990.1.mk 296 FAKRLGLSFEFHP-IVRKVGDIDASMVQVRRGETLAVHWLQ--HSLYDATGPDWK----TMRLIEELAPRIVTLVEQDMSH-SG 371 *************.799***********************9..999999999888....**********************.89 PP GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle.eaGFkpvplsekaa 334 sFl+rf+ +l+yys++fdsle+ lp ++ r++vE+ l+ rei n++a g +r + ++++Wr+ l+ + GF +v +s + + Pav_sc0000583.1_g990.1.mk 372 SFLDRFVGSLHYYSTMFDSLESYLPGDNPGRHNVEHCLFYREINNILAIGGPARSGED-KFRQWRSELGgRNGFMQVGMSANSM 454 9****************************************************77665.5*******9637************* PP GRAS 335 kqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +qa+l+l++++ +gy++ + +g++ lgWkd +L+++SaW+ Pav_sc0000583.1_g990.1.mk 455 AQAQLILNMFPpTHGYSLVQGDGTIRLGWKDTSLYVASAWT 495 ****************************************6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence |
MKAKFEMAHG TMNMIQSHEP WTNYPSPVVG FQNNPTSNTF PNPKSIENRF VTLERSELSQ 60 WVEHITKQLI DDLPEPAATT TTTDTLQISE DYFVPSSLSA DLISPSKISQ RSYGDHDHEL 120 QWGNELQLHA DNNIRARGMS KLDEHGLSLI TLLFECAVAI SVDNLPEAHR MLLELSQMAS 180 PYGPSCAERV VAYFAKAMTS RVINSWLGIC TPLVNYKSIH SAFQVFNTIS PFIKFAHFTS 240 NQAILEAFHR HDRGLQWPAL FHILATRMEG PPHLRMTGVG TSSEILMETG KQLSNFAKRL 300 GLSFEFHPIV RKVGDIDASM VQVRRGETLA VHWLQHSLYD ATGPDWKTMR LIEELAPRIV 360 TLVEQDMSHS GSFLDRFVGS LHYYSTMFDS LESYLPGDNP GRHNVEHCLF YREINNILAI 420 GGPARSGEDK FRQWRSELGG RNGFMQVGMS ANSMAQAQLI LNMFPPTHGY SLVQGDGTIR 480 LGWKDTSLYV ASAWTCSHAS R |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 1e-133 | GRAS family protein |