PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000583.1_g990.1.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 501aa    MW: 56372.9 Da    PI: 6.693
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000583.1_g990.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS317.82.3e-971494951374
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                l++lL+ecA a+s ++l +a+++L +ls++asp+g +  +R++ayf++A+ +r+ +s+ +++  l   ++         +a+++
  Pav_sc0000583.1_g990.1.mk 149 LITLLFECAVAISVDNLPEAHRMLLELSQMASPYGpSCAERVVAYFAKAMTSRVINSWLGICTPLVNYKS-------IHSAFQV 225
                                5789*******************************9999**********************976654444.......56899** PP

                       GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLak 167
                                f+ +sP++kf+h+t NqaIlea+++++r          GlQWpaL++ La+R egpp+lR+Tgvg     s+e l etg++L++
  Pav_sc0000583.1_g990.1.mk 226 FNTISPFIKFAHFTSNQAILEAFHRHDR----------GLQWPALFHILATRMEGPPHLRMTGVGT----SSEILMETGKQLSN 295
                                *************************986..........****************************....99************ PP

                       GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                                fA++lg++fef++ +++++ d++ ++ +v++gE+laV++    h+l+d +++  +    +++l+ +l P++v++veq+++h s+
  Pav_sc0000583.1_g990.1.mk 296 FAKRLGLSFEFHP-IVRKVGDIDASMVQVRRGETLAVHWLQ--HSLYDATGPDWK----TMRLIEELAPRIVTLVEQDMSH-SG 371
                                *************.799***********************9..999999999888....**********************.89 PP

                       GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle.eaGFkpvplsekaa 334
                                sFl+rf+ +l+yys++fdsle+ lp ++  r++vE+ l+ rei n++a  g +r  +  ++++Wr+ l+ + GF +v +s + +
  Pav_sc0000583.1_g990.1.mk 372 SFLDRFVGSLHYYSTMFDSLESYLPGDNPGRHNVEHCLFYREINNILAIGGPARSGED-KFRQWRSELGgRNGFMQVGMSANSM 454
                                9****************************************************77665.5*******9637************* PP

                       GRAS 335 kqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                +qa+l+l++++  +gy++ + +g++ lgWkd +L+++SaW+
  Pav_sc0000583.1_g990.1.mk 455 AQAQLILNMFPpTHGYSLVQGDGTIRLGWKDTSLYVASAWT 495
                                ****************************************6 PP

Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    
MKAKFEMAHG TMNMIQSHEP WTNYPSPVVG FQNNPTSNTF PNPKSIENRF VTLERSELSQ  60
WVEHITKQLI DDLPEPAATT TTTDTLQISE DYFVPSSLSA DLISPSKISQ RSYGDHDHEL  120
QWGNELQLHA DNNIRARGMS KLDEHGLSLI TLLFECAVAI SVDNLPEAHR MLLELSQMAS  180
PYGPSCAERV VAYFAKAMTS RVINSWLGIC TPLVNYKSIH SAFQVFNTIS PFIKFAHFTS  240
NQAILEAFHR HDRGLQWPAL FHILATRMEG PPHLRMTGVG TSSEILMETG KQLSNFAKRL  300
GLSFEFHPIV RKVGDIDASM VQVRRGETLA VHWLQHSLYD ATGPDWKTMR LIEELAPRIV  360
TLVEQDMSHS GSFLDRFVGS LHYYSTMFDS LESYLPGDNP GRHNVEHCLF YREINNILAI  420
GGPARSGEDK FRQWRSELGG RNGFMQVGMS ANSMAQAQLI LNMFPPTHGY SLVQGDGTIR  480
LGWKDTSLYV ASAWTCSHAS R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-133GRAS family protein