PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000568.1_g350.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 344aa MW: 38547.9 Da PI: 8.23

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000568.1_g350.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42	1.7e-13	167	213	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L ++P + kK++Ka++L A++YIk+Lq Pav_sc0000568.1_g350.1.mk 167 DHIIAERKRREKLSQRFIALSAMVPGL-----KKMDKASVLGDAIKYIKQLQ 213 699**********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MAMSSIGGMP ELGMEDPYFI NQWHMNSLDE VSMLPPAAAF GENFNQSHFH PNFNLKTSMD 60 SSHGGIHRPM KQLKTDGWSS CKTDHHESNP QVASSPNFLS FVNSNSTNQM GVLKPKEEAA 120 VCSKSNNSLP SDILLSQSSF GNQSYLFKAS QGTKRVNTNT RLSTTQDHII AERKRREKLS 180 QRFIALSAMV PGLKKMDKAS VLGDAIKYIK QLQDKVKTLE EQTRKKNMES VVFVKKTQLF 240 AKDDNSSSEE NNSSGPFDET LPEIEARFCD NNVMIRIHCE KRKGVVEKTI AEVEKLQLKF 300 INSSVLTFGG CALDVTIIAQ MEVEFSLSVK ELVKNLRSAF DMFM

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MAMSSIGGMP ELGMEDPYFI NQWHMNSLDE VSMLPPAAAF GENFNQSHFH PNFNLKTSMD  60
SSHGGIHRPM KQLKTDGWSS CKTDHHESNP QVASSPNFLS FVNSNSTNQM GVLKPKEEAA  120
VCSKSNNSLP SDILLSQSSF GNQSYLFKAS QGTKRVNTNT RLSTTQDHII AERKRREKLS  180
QRFIALSAMV PGLKKMDKAS VLGDAIKYIK QLQDKVKTLE EQTRKKNMES VVFVKKTQLF  240
AKDDNSSSEE NNSSGPFDET LPEIEARFCD NNVMIRIHCE KRKGVVEKTI AEVEKLQLKF  300
INSSVLTFGG CALDVTIIAQ MEVEFSLSVK ELVKNLRSAF DMFM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	172	177	ERKRRE
2	173	178	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	6e-66	bHLH family protein