PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000567.1_g740.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family RAV
Protein Properties Length: 421aa    MW: 45851.3 Da    PI: 9.5312
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000567.1_g740.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.29.6e-1481129155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s+ykGV   + +grW A+I++      ++r++lg+f  ++eAaka++ a+++++g
  Pav_sc0000567.1_g740.1.mk  81 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDVAAQRFRG 129
                                89****9888.8*********3.....5**********99*************98 PP
2B396.51.7e-30219332196
                                EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHH CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWk 66 
                                f+k+ tpsdv+k++rlv+pk++ae+h                  gg+  +++ l +ed  g++W+++++y+++s++yvltkGW+
  Pav_sc0000567.1_g740.1.mk 219 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqsgnnfnnhtttstsGGSACKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWS 302
                                89****************************999998888888876676799********************************* PP

                                HHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                         B3  67 eFvkangLkegDfvvFkldgrsefelvvkv 96 
                                +Fvk+++Lk+gD+v F+++  ++++l++ +
  Pav_sc0000567.1_g740.1.mk 303 RFVKEKNLKAGDIVSFQRSTGQDKQLYIDW 332
                                *****************8766777777765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    
MDGISLSSTE ESTTSDSISI SPNNHLLPTT VAISPIAKSS PHANSLCRLG SGASSVILDS  60
EISSGGGGIG IEAESRKLPL SKYKGVVPQP NGRWGAQIYE KHQRVWLGTF NEEDEAAKAY  120
DVAAQRFRGR DAVTNFKPSA TATSTDDDES DDLEAAFLNT HSKSEIVDML RKHTYNDELE  180
QSKRNNYGFL DANGKRARAH GPLGPFGSDR VPKAREQLFE KAVTPSDVGK LNRLVIPKQH  240
AEKHFPLQSG NNFNNHTTTS TSGGSACKGV LLNFEDVGGK VWRFRYSYWN SSQSYVLTKG  300
WSRFVKEKNL KAGDIVSFQR STGQDKQLYI DWKPRMNVNN NNTSGVGSNP VQVQPVQMVR  360
LFGVNIFKIP GSGGGAVVDA ATAAIGGGSC NNNINNVGKR MREMELLELE FSKKPRIIGA  420
L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-125RAV family protein