PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000562.1_g070.1.br | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | GRAS | ||||||||
Protein Properties | Length: 98aa MW: 11254.9 Da PI: 4.8629 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 52.6 | 8.7e-17 | 17 | 97 | 153 | 234 |
GRAS 153 gskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl 234 ++ + le +g+rL+ + e++++ +ef+ v d++ ++L+v+p EalaV++ lqlh+++desv+ +++rde+L+++ksl Pav_sc0000562.1_g070.1.br 17 DHGDGLEVVGRRLKAIFEKFNILVEFHG-VLVFAPDVTQDMLDVRPVEALAVKFPLQLHHTPDESVDENNPRDELLRMIKSL 97 47899***********************.67789999*******************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence |
MQFESFRDFL SGITLHDHGD GLEVVGRRLK AIFEKFNILV EFHGVLVFAP DVTQDMLDVR 60 PVEALAVKFP LQLHHTPDES VDENNPRDEL LRMIKSLL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50600.1 | 2e-19 | GRAS family protein |