PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000549.1_g570.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GATA

Protein Properties

Length: 542aa MW: 60122.7 Da PI: 7.2564

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000549.1_g570.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.8	4.5e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Pav_sc0000549.1_g570.1.mk 7 CYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGT 41 **************55555*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MGKQGPCYHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDYEDH 60 RVARVKSISI NKNKEIKLVK RKQNPDSVMV GGVAADYTHG FRKVTDEDTS NRSSSGSAVS 120 NSESCAQFGS ADASDLTGPA QSMVWDSMVP SRKRTCIGRP KPSPVEKLTK DLYTILHEQQ 180 SSYFSGSSEE DLLFECETPM VSVEIGHGSV LMRHPSSITR EEESEASSLS VDNKQCHINE 240 AYSHPATLLV HNNKGAIMTS TVTGKMNNLA GQGMQQEPLK RDKSQYDNFQ ILGNHNSPLC 300 HVDLNDILNF EEFTRQLTNE EQQQLLKHLP PVDVVKFPYS LKSMFDSPQF RENLTSFQQL 360 LAEGVFDISF LGAKTEDCKT LKRLVLSNSS KSKWVERYHL LKKCKTSPGK SIISGPNALA 420 SSNFRHVKRL RDSETQSFPD VKMMMKSPKR IIVKGSNENK DLMDYDGSCF SPRSLFALPA 480 DGSSLLMESM NFVDESSDQD LLLDLPSNGS FAQAELLHPA MSFGAQQAST SSSSIYPHVL 540 HP

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MGKQGPCYHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDYEDH  60
RVARVKSISI NKNKEIKLVK RKQNPDSVMV GGVAADYTHG FRKVTDEDTS NRSSSGSAVS  120
NSESCAQFGS ADASDLTGPA QSMVWDSMVP SRKRTCIGRP KPSPVEKLTK DLYTILHEQQ  180
SSYFSGSSEE DLLFECETPM VSVEIGHGSV LMRHPSSITR EEESEASSLS VDNKQCHINE  240
AYSHPATLLV HNNKGAIMTS TVTGKMNNLA GQGMQQEPLK RDKSQYDNFQ ILGNHNSPLC  300
HVDLNDILNF EEFTRQLTNE EQQQLLKHLP PVDVVKFPYS LKSMFDSPQF RENLTSFQQL  360
LAEGVFDISF LGAKTEDCKT LKRLVLSNSS KSKWVERYHL LKKCKTSPGK SIISGPNALA  420
SSNFRHVKRL RDSETQSFPD VKMMMKSPKR IIVKGSNENK DLMDYDGSCF SPRSLFALPA  480
DGSSLLMESM NFVDESSDQD LLLDLPSNGS FAQAELLHPA MSFGAQQAST SSSSIYPHVL  540
HP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-152	GATA family protein