PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000522.1_g090.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 206aa MW: 22872 Da PI: 3.939 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.4 | 3.7e-11 | 139 | 163 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++r+G+Ck+G+ CkF H++ Pav_sc0000522.1_g090.1.mk 139 QNICTYYSRYGICKFGPVCKFDHSE 163 568********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence |
MEVSEAISVP PNLDANNNHH IDEHHQPSHS ELGFLPSSPD PDPAPSDFLD ELQKLDLKEK 60 EEDHLDEFQK LDLKEEDAKE EEDEEDVEKK SSNGRETENE NENENESERQ SEQSDGGENQ 120 SEDGGVPSQN TEWNGYQDQN ICTYYSRYGI CKFGPVCKFD HSENITSSTT SGPDHQLPFS 180 DSATTNGTGT AGSRSGTDAI SQLQPV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-11 | C3H family protein |