PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000502.1_g720.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 487aa MW: 56245.5 Da PI: 7.5964

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000502.1_g720.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.6	5.7e-20	48	130	1	86
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 +fYn+YA+e+GFsvr +skks ++ge++++++vC+keg+ ++e++ +r+r + r +Cka+l v k++ g ++vt +e+ Pav_sc0000502.1_g720.1.br 48 DFYNQYAREAGFSVRSYSSKKS-KDGEVIRKEYVCNKEGSWSTETSG--AVKRRRGVGRESCKARLIVVKSRYGGYVVTIFEEA 128 6***************9999.8889***********99988..8889999************************** PP FAR1 85 Hn 86 H+ Pav_sc0000502.1_g720.1.br 129 HT 130 *7 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MEANNGILVH METDSETNPS VSIFYPQVIG ELTPFQGQQF ETLEEVYDFY NQYAREAGFS 60 VRSYSSKKSK DGEVIRKEYV CNKEGSWSTE TSGAVKRRRG VGRESCKARL IVVKSRYGGY 120 VVTIFEEAHT FGVSRGGEGG IRRRHLLKSH RRISGVDQLV AQQLISVNVS THQQYDILAT 180 QAGGIENVGF TQQDMYNSNR DRRMKIKGHD GEMLFDHFMN EQEKNPGFIF KVETNIEHKI 240 TRCFWADAIS RQSYKFYGDA VIFDTTYNTN RYCMIFAPIM GVNNHGQTII FSGAFLSDET 300 ADSFIWLFRE FLRAMPGDAP KIIITDQDPA MTKAISEALP NTFHRYCSWH ILNKFSDKPE 360 CILHYQQFRE CVWNSESRDE FDLRWKRIVE DNGLNEDTWL QSIFNIRSKW VPAYVNHIFS 420 CGMSSSQRAE SGHAFFKRYV SKNNSLVDFM VQFNRGLLHQ RHLELMADHT DINEKAKTKC 480 PIICAVY

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MEANNGILVH METDSETNPS VSIFYPQVIG ELTPFQGQQF ETLEEVYDFY NQYAREAGFS  60
VRSYSSKKSK DGEVIRKEYV CNKEGSWSTE TSGAVKRRRG VGRESCKARL IVVKSRYGGY  120
VVTIFEEAHT FGVSRGGEGG IRRRHLLKSH RRISGVDQLV AQQLISVNVS THQQYDILAT  180
QAGGIENVGF TQQDMYNSNR DRRMKIKGHD GEMLFDHFMN EQEKNPGFIF KVETNIEHKI  240
TRCFWADAIS RQSYKFYGDA VIFDTTYNTN RYCMIFAPIM GVNNHGQTII FSGAFLSDET  300
ADSFIWLFRE FLRAMPGDAP KIIITDQDPA MTKAISEALP NTFHRYCSWH ILNKFSDKPE  360
CILHYQQFRE CVWNSESRDE FDLRWKRIVE DNGLNEDTWL QSIFNIRSKW VPAYVNHIFS  420
CGMSSSQRAE SGHAFFKRYV SKNNSLVDFM VQFNRGLLHQ RHLELMADHT DINEKAKTKC  480
PIICAVY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-83	FAR1 family protein