PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000500.1_g590.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 96aa MW: 11022.5 Da PI: 7.5714 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.3 | 1.9e-06 | 46 | 57 | 16 | 27 |
TTTTT-SS-SSS CS zf-CCCH 16 kyGdrCkFaHgp 27 +yG+rC+FaHg+ Pav_sc0000500.1_g590.1.mk 46 PYGERCRFAHGE 57 8*********96 PP | |||||||
2 | zf-CCCH | 22.7 | 1.8e-07 | 67 | 91 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt C++f+ C +G+rC+F+H+ Pav_sc0000500.1_g590.1.mk 67 KTTQCKHFHSISGCDFGNRCHFIHD 91 8999********************5 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence |
MLQPNMGLGP MAMDPAQAPN VHMPPPEITN YKTQLYDKWS TPEGYPYGER CRFAHGEAEW 60 KKQPQHKTTQ CKHFHSISGC DFGNRCHFIH DGPCHQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.2 | 4e-12 | C3H family protein |