PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000481.1_g080.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 848aa MW: 92981.8 Da PI: 6.2114 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.6e-18 | 21 | 79 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Pav_sc0000481.1_g080.1.mk 21 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 79 6789*****************************************************97 PP | |||||||
2 | START | 170.2 | 1.3e-53 | 170 | 376 | 2 | 203 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevi 85 +aee+++e+++ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ ++l i Pav_sc0000481.1_g080.1.mk 170 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRLSWFRDCRCHDVLSLI 252 68999*****************************************************.8999999999*************** PP CTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEE CS START 86 ssg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghsk 163 g g+++lm+++++a+++l++ Rdf+++Ry+ +l++g++v++++S++s + p+ s+s+vRae+lpSg+li+p+++g+s Pav_sc0000481.1_g080.1.mk 253 PAGngGTIELMYMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVVCERSLTSSTGGPTgppSASFVRAEMLPSGYLIRPCEGGGSI 336 *9999**********************************************99999999************************* PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrq 203 + +v+hvdl++++++++lrsl++s+ + ++k++ ++l++ Pav_sc0000481.1_g080.1.mk 337 INIVDHVDLDAWSVPEVLRSLYESSKILAQKMTISALRHI 376 **********************************999876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 848 aa Download sequence |
MALVMNRDSP GSSSKQMDSS KYVRYTPEQV EALERVYSEC PKPSSLRRQQ LIRECPILSN 60 IEPKQIKVWF QNRRCREKQR KESSRLQTVN RKLTAMNKLL MEENDRLQKQ VSHLVYENGF 120 MRQQLHSASG TTTDNSCESV VMSGQHQQQQ NPTPQHPQRD ANNPAGLLAI AEETLAEFLS 180 KATGTAVDWV QMIGMKPGPD SIGIVAVSRN CSGVAARACG LVSLEPTKVA EILKDRLSWF 240 RDCRCHDVLS LIPAGNGGTI ELMYMQTYAP TTLAAARDFW TLRYTTSLED GSLVVCERSL 300 TSSTGGPTGP PSASFVRAEM LPSGYLIRPC EGGGSIINIV DHVDLDAWSV PEVLRSLYES 360 SKILAQKMTI SALRHIRQIA QETSGEIQYG GGRQPAVLRT FCQRLCRYAL QDLGGFNDAV 420 NGFADDGWSL MGSDGVEDVT ITINSSPNKF LGSQYNASIF PTFGGGVLCA KASMLLQSVP 480 PALLVRFLRE HRSEWADYGV DAYSAACLKA SPYAVPCARP GGFPSSQVIL PLAQTVENEE 540 FLEVVRLEGH AFSPEDVALA RDMYLLQLCS GVDENAVGSC AQLVFAPIDE SFADDAPLLP 600 SGFHDGPTAN RTLDLASTLE VGPSGSRPVN EADGNSYNLR SVLTIAFQFT FENHLRDNVA 660 AMARQYVRSV VSSVQRVAMA IAPSRLSSQM VPKPLPGSPE AHTLARWICR SYRIHTGAEL 720 FRVDSPSGDA VLKQLWHHSD AIMCCSVKTN ASPVFTFANQ AGLDMLETTL VALQDIMLDK 780 ILDEAGRKIL CSEFSKIMQQ GFAYLPAGLC ASSMGRPVSY DQAVAWKVVN DDDSNHCLAF 840 MFMSWSFV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |