PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000467.1_g910.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 266aa MW: 28938.3 Da PI: 7.8226

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000467.1_g910.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00041	125	147	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H +H Pav_sc0000467.1_g910.1.mk 125 YECKTCNRSFPSFQALGGHRASH 147 99**********99999998887 PP
2	zf-C2H2	13.5	0.00022	203	225	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Pav_sc0000467.1_g910.1.mk 203 HECSICGSEFTSGQALGGHMRRH 225 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence
MEGQEELVLS SDQASQMIMI KGKRTKRPRP LSPNGVVAAG TSSSSSACGG GGAMGGDHEY 60 NYYGNSFTSP TTSGEISEST EEEEDMANCL ILLAQGDHVT VNPKQIFEQR LAQTSNMGKA 120 GFFFYECKTC NRSFPSFQAL GGHRASHKKP KAVSTEEKKP APAHFIPAST FEEFEDQSKQ 180 FIKYKSSPPP AIPSQIGSKP KIHECSICGS EFTSGQALGG HMRRHRTAAA AANNSTNHVN 240 VGSEAYERDC VGIEMSKYTL RERERR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	26	30	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	2e-40	C2H2 family protein