PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000465.1_g1080.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YA
Protein Properties Length: 300aa    MW: 32958.7 Da    PI: 9.6722
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000465.1_g1080.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1032.8e-32124180158
                   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                 +ep+YVNaKQyq+Il+RRq+Rak+e e+kl +k rkpylheSRh+hA+rR+Rg+gGrF
  Pav_sc0000465.1_g1080.1.mk 124 QEPVYVNAKQYQGILRRRQARAKAELERKL-IKVRKPYLHESRHQHAMRRARGTGGRF 180
                                 69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MPKLNCSLAV ELTILTHREI VRFRGPKSRV FIWDWLFLSA TGNDGQERQN VPHVGSTVPT  60
VRDDCLAEPP QLELVGHSIA CASNPYQDPY YAGMMAAYGH QPLGYPPFLG MPHARMPLPL  120
EMAQEPVYVN AKQYQGILRR RQARAKAELE RKLIKVRKPY LHESRHQHAM RRARGTGGRF  180
AKKTNGDKSN STGQEKGTGS GPAHSSQSGS SSGSEPFPSD SAETWNSSNS QQEGRGSQVH  240
DAYTAHNYAN GSGCYQTHGG LQASMYPSYS GKRGEEGDCT GQQRGSISSN QASQRRLAIQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.12e-75NF-YA family protein