PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000464.1_g100.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 86aa    MW: 10191.8 Da    PI: 9.8683
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000464.1_g100.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161057148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT+eEd ll+++++ +G g W+ ++ + g++R++k+c++rw++yl
  Pav_sc0000464.1_g100.1.br 10 KGAWTKEEDGLLKQCIENHGEGKWHQVPYKAGLKRCRKSCRLRWLNYL 57
                               79*********************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    
MEGNNLDVRK GAWTKEEDGL LKQCIENHGE GKWHQVPYKA GLKRCRKSCR LRWLNYLKPN  60
IKRGEFAEDE VDLIVRLHKL LGNRYQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.17e-40MYB family protein