PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000395.1_g240.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 225aa    MW: 26113.4 Da    PI: 8.0408
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000395.1_g240.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.2e-1966119356
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                k+ +++++qle Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k
  Pav_sc0000395.1_g240.1.mk  66 KKKRLSTDQLESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 119
                                55679************************************************9 PP
2HD-ZIP_I/II119.22.2e-3866155291
                HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                                kk+rls++q+++LE+sF+ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y+aLk++yd +++e+++L++ev 
  Pav_sc0000395.1_g240.1.mk  66 KKKRLSTDQLESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLERLYDALKQEYDVVSKEKQKLQEEVM 149
                                9*********************************************************************************** PP

                HD-ZIP_I/II  86 eLreel 91 
                                +L++ l
  Pav_sc0000395.1_g240.1.mk 150 KLKTIL 155
                                **9766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MDWNSNLRHL VSRPEPSFGF LYNYNYDCYP PGMEMKHQAM MSESSQSLVP GLDRNHSSYG  60
CSSQDKKKRL STDQLESLER SFQEEIKLDP DRKMKLSREL GLQPRQIAVW FQNRRARWKA  120
KQLERLYDAL KQEYDVVSKE KQKLQEEVMK LKTILRDEVA RKQVSTGYTE ISGEETVEST  180
SVAIRSSNKG GGTSQHQVAE CNYLFNVEEY NPISPPFWGA LPSYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16695KKKRLSTDQLESLERSFQEEIKLDPDRKMK
2114122RRARWKAKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-57HD-ZIP family protein