PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000383.1_g410.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

CO-like

Protein Properties

Length: 480aa MW: 53565.7 Da PI: 4.9056

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000383.1_g410.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.2	1.6e-08	16	61	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +r C+ + k++++fC ++ +lC+ C + H+ H++v+l Pav_sc0000383.1_g410.1.mk 16 ARACDSCLIKRARWFCAADDAFLCQRCDGSVHSAnqlasrHERVKL 61 678*****************************66889999998875 PP
2	CCT	67.6	3.3e-23	410	452	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+ Pav_sc0000383.1_g410.1.mk 410 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 452 9****************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MITGKKAANA MGGNTARACD SCLIKRARWF CAADDAFLCQ RCDGSVHSAN QLASRHERVK 60 LQAASFKPNQ STLLAADQSP PAWHKGFTRK ARTPRHNNKP PFMAKDDKEK VRLNPPLPFV 120 PEIGCEEANY MDDDEENEDL EQLLYRVPIY DPFAAELCNM SSHEVGNSTS AINLDDEVTE 180 MRRRNHHEVG DDEEEDNNNN YGGNELDNLP GFLPSDMELA EFAADVENLL GGGLDDEDSS 240 DIKGVLGLLD DSKLEGDGGV DVCMKNVDIN EDRKAVKVEE EAEGMEFNPS MLDWNSDYEL 300 RLSSSPLPMG GEEEKVVFLM GAQSSDEVAQ MDNKQMMMKR KICLRLDYEA VITAWANQGS 360 PWTTGTRPEL NPDDGWLDCM GIWGSDQIHQ PHGHGESAGC VGGRGDDRGR EARVSRYREK 420 RRTRLFSKKI RYEVRKLNAE KRPRMKGRFV KRTCGSNFVG SSSSNSSKTA AAAFPYLVHQ

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MITGKKAANA MGGNTARACD SCLIKRARWF CAADDAFLCQ RCDGSVHSAN QLASRHERVK  60
LQAASFKPNQ STLLAADQSP PAWHKGFTRK ARTPRHNNKP PFMAKDDKEK VRLNPPLPFV  120
PEIGCEEANY MDDDEENEDL EQLLYRVPIY DPFAAELCNM SSHEVGNSTS AINLDDEVTE  180
MRRRNHHEVG DDEEEDNNNN YGGNELDNLP GFLPSDMELA EFAADVENLL GGGLDDEDSS  240
DIKGVLGLLD DSKLEGDGGV DVCMKNVDIN EDRKAVKVEE EAEGMEFNPS MLDWNSDYEL  300
RLSSSPLPMG GEEEKVVFLM GAQSSDEVAQ MDNKQMMMKR KICLRLDYEA VITAWANQGS  360
PWTTGTRPEL NPDDGWLDCM GIWGSDQIHQ PHGHGESAGC VGGRGDDRGR EARVSRYREK  420
RRTRLFSKKI RYEVRKLNAE KRPRMKGRFV KRTCGSNFVG SSSSNSSKTA AAAFPYLVHQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	421	437	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68520.1	4e-73	CO-like family protein