PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000363.1_g360.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 545aa MW: 61952 Da PI: 6.9071

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000363.1_g360.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.8	1.6e-29	128	213	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+ Pav_sc0000363.1_g360.1.mk 128 RWPRQETLTLLEIRSRLDFKFKEANQKGPLWDEVSRIMcEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKNYRFFR 209 8*********************************998***************************97..66678* PP trihelix 84 qlea 87 qlea Pav_sc0000363.1_g360.1.mk 210 QLEA 213 85 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MEMEDQYNMS DLRQLMNGGG SRAHFPSIPL QAATELFPSH RVPPLTAPPA HHHQQHHHYE 60 QLMMMGRPQP HDHHIINPRG LHHHEFRSPD SAAGGGAAAN SATVTASLSG GGGLMEAEAG 120 GDIGGSGRWP RQETLTLLEI RSRLDFKFKE ANQKGPLWDE VSRIMCEEHG YQRSGKKCRE 180 KFENLYKYYK KTKEGKAGRQ DGKNYRFFRQ LEALYGETTN SVVSTSLPEA HFIGNNSNNN 240 NLRYQTTINA QANQEITTPY HHSTDQKHCD SLSLSNSSEF DTSSSEDQDN NDVSAAAMDD 300 DSPDIKTTRK RRGGRGWKVK IKEFIDAQMR KLMDKQEEWL ERLMRTLEQK ERERMVREEE 360 WRKQEVERVE KEHKFWAKER AWIEARDKAL MEALHKLTGG SSSTDQAKAN YSSPSPDHDH 420 DQHHHHHHHH HHQTSSDHDQ IVHNTSSARE LLNKKRKENV NSKSSACYFQ NNESCSSLYS 480 SQGGYCAEMN DHEQGGNNDG SNNSPCGNAN VGSAVQDNCF PFLMSEGENL WENYGLKLSK 540 GSQNQ

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MEMEDQYNMS DLRQLMNGGG SRAHFPSIPL QAATELFPSH RVPPLTAPPA HHHQQHHHYE  60
QLMMMGRPQP HDHHIINPRG LHHHEFRSPD SAAGGGAAAN SATVTASLSG GGGLMEAEAG  120
GDIGGSGRWP RQETLTLLEI RSRLDFKFKE ANQKGPLWDE VSRIMCEEHG YQRSGKKCRE  180
KFENLYKYYK KTKEGKAGRQ DGKNYRFFRQ LEALYGETTN SVVSTSLPEA HFIGNNSNNN  240
NLRYQTTINA QANQEITTPY HHSTDQKHCD SLSLSNSSEF DTSSSEDQDN NDVSAAAMDD  300
DSPDIKTTRK RRGGRGWKVK IKEFIDAQMR KLMDKQEEWL ERLMRTLEQK ERERMVREEE  360
WRKQEVERVE KEHKFWAKER AWIEARDKAL MEALHKLTGG SSSTDQAKAN YSSPSPDHDH  420
DQHHHHHHHH HHQTSSDHDQ IVHNTSSARE LLNKKRKENV NSKSSACYFQ NNESCSSLYS  480
SQGGYCAEMN DHEQGGNNDG SNNSPCGNAN VGSAVQDNCF PFLMSEGENL WENYGLKLSK  540
GSQNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10000.1	5e-82	Trihelix family protein