PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000358.1_g630.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 179aa MW: 20719.8 Da PI: 8.5689 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 100.9 | 4.7e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gklye++s Pav_sc0000358.1_g630.1.mk 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 87.7 | 2.3e-29 | 83 | 159 | 10 | 86 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 +++++++qe+ Lk+++e Lq++qR+llGedL +L+ keL+qLe+qLe sl++iRs+K++++l+q+ +lq+k Pav_sc0000358.1_g630.1.mk 83 PVNETQNSYQEYLTLKARVEVLQQSQRNLLGEDLAPLNTKELEQLEHQLEASLNQIRSTKTQFMLDQLCDLQNKVSH 159 55778********************************************************************9765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFCSS 60 LSMLKTLEKY QRCSYGSLEA NKPVNETQNS YQEYLTLKAR VEVLQQSQRN LLGEDLAPLN 120 TKELEQLEHQ LEASLNQIRS TKTQFMLDQL CDLQNKVSHE SHLRVNVDTY TCTCAYMLM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.1 | 8e-89 | MIKC_MADS family protein |