PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000358.1_g330.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

TCP

Protein Properties

Length: 388aa MW: 42864.9 Da PI: 7.5176

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000358.1_g330.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	97.8	2e-30	59	184	3	118
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa......sec.eaesss 79 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl + i++l+ ++ ++ +++ ++++s+ Pav_sc0000358.1_g330.1.mk 59 GGKDRHSKVSTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLDVTEDDIDKLPPLQVPHGfghqfhQQMlNPHHSH 142 78*************************************************************555444433323336666666 PP TCP 80 ssasnsssg..............kaaksaakskksqksaasalnlak.esraka 118 ++++s+++ k + +++a+++ + ++r++ Pav_sc0000358.1_g330.1.mk 143 DQGHHSNNSlaaapffdvnssfmK------------EADHQAHQVVHdHQRSST 184 666666666775444444333331............222222222221333222 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MISNSREKGF QAKQEGHNNT NTDGNSSSFN KASSSSTTTS RQWSGFRNPR IVRVSRTFGG 60 KDRHSKVSTV RGLRDRRIRL SVPTAIQLYD LQDRLGLSQP SKVIDWLLDV TEDDIDKLPP 120 LQVPHGFGHQ FHQQMLNPHH SHDQGHHSNN SLAAAPFFDV NSSFMKEADH QAHQVVHDHQ 180 RSSTTSNVGD QKGKSIKTPD EQDDDDQNHH QDGNIGGGQL LAQKLFPLGN HPSSIPGLLN 240 NAMAYNYYHN YSEPSSLSLS QFGGHGFAPV PQIDHHSHMM SNTLSFSTSM PSGSQLFFCP 300 STATPSLFGP YPPYITNPVV ESGTTTSEPR SQANHFQFLS SSNSPNFLPN ALMPSLQSLK 360 SYPTSVNPKQ LHSNSQDNNG SQPNKDHN

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MISNSREKGF QAKQEGHNNT NTDGNSSSFN KASSSSTTTS RQWSGFRNPR IVRVSRTFGG  60
KDRHSKVSTV RGLRDRRIRL SVPTAIQLYD LQDRLGLSQP SKVIDWLLDV TEDDIDKLPP  120
LQVPHGFGHQ FHQQMLNPHH SHDQGHHSNN SLAAAPFFDV NSSFMKEADH QAHQVVHDHQ  180
RSSTTSNVGD QKGKSIKTPD EQDDDDQNHH QDGNIGGGQL LAQKLFPLGN HPSSIPGLLN  240
NAMAYNYYHN YSEPSSLSLS QFGGHGFAPV PQIDHHSHMM SNTLSFSTSM PSGSQLFFCP  300
STATPSLFGP YPPYITNPVV ESGTTTSEPR SQANHFQFLS SSNSPNFLPN ALMPSLQSLK  360
SYPTSVNPKQ LHSNSQDNNG SQPNKDHN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	2e-49	TCP family protein