PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pav_sc0000348.1_g790.1.br | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 245aa MW: 27673.9 Da PI: 4.7981 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 114.8 | 5.6e-36 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 aCa+Ck++rrkC + C +apyfpa++ ++f+n++k+FG+sn++k+++ + +++r++a++s++ e++ar +dPv+G++g+i+ l+ Pav_sc0000348.1_g790.1.br 13 ACASCKHQRRKCDETCEMAPYFPASRYSEFQNAQKIFGVSNIQKIMAMAAPDQRQAAAESIITEGNARKNDPVHGCLGIIRGLN 96 7*********************************************************************************** PP DUF260 85 qqleqlkaelallkee 100 q++ l+ el+ +ke+ Pav_sc0000348.1_g790.1.br 97 AQIQGLERELHIMKEH 112 **********999886 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 245 aa Download sequence |
MENRDQVAAQ NHACASCKHQ RRKCDETCEM APYFPASRYS EFQNAQKIFG VSNIQKIMAM 60 AAPDQRQAAA ESIITEGNAR KNDPVHGCLG IIRGLNAQIQ GLERELHIMK EHLELCKENE 120 ELDGKKNQSK EEDLQHDQSD GLNFPSTILP DLPSHVMAEM RKYEQGYNYW STLEDAEEKV 180 FDIRLIEPVL FDSNLKRNAS SSGSGESSFE LIIFFLLWNC SAAASKAKEK QPSESLQEKT 240 TDDEA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-27 | LBD family protein |