PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000348.1_g650.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 312aa    MW: 35667.4 Da    PI: 8.8859
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000348.1_g650.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.36.6e-141195296
                               EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                         B3  2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                               fk+l       s++l +p  f  ++ g+++++s    l  +   +W+v++  +k  ++++++kGWkeFv+++gLk  +f++F++ g
  Pav_sc0000348.1_g650.1.mk 11 FKAL--VRD-FSNQLKIPPAFYVHFaGEVPRRS----LLRTPAGTWNVNV--EKVNDGFFFQKGWKEFVHDHGLKLCEFLIFRYAG 87
                               5555..333.4567********88876666654....55566679*****..99999***************************99 PP

                               SSEE..EEEE CS
                         B3 87 rsefelvvkv 96
                               + +f   v v
  Pav_sc0000348.1_g650.1.mk 88 NLKF--DVDV 95
                               8766..4544 PP
2B368.59.3e-22219309298
                                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                                f + +++ +  +grlv+pk+f +++ gkk   k ++l+d s r+W vk+  + +++++ l++GW +Fv+++ Lk+gD++vF+l+
  Pav_sc0000348.1_g650.1.mk 219 FRAILHKAYVDKGRLVIPKSFQNSCIGKK---KYVRLQD-SKRRWLVKC--TSNRNSCRLSAGWYQFVRDHALKVGDVCVFELI 296
                                45555666667789********9995553...4699999.899******..66666666************************* PP

                                SSSEE..EEEEE- CS
                         B3  86 grsefelvvkvfr 98 
                                +r+++ ++v++fr
  Pav_sc0000348.1_g650.1.mk 297 DRNDAVMKVSIFR 309
                                **9*99****998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MARLRRKPSF FKALVRDFSN QLKIPPAFYV HFAGEVPRRS LLRTPAGTWN VNVEKVNDGF  60
FFQKGWKEFV HDHGLKLCEF LIFRYAGNLK FDVDVYGRNG CKKEFVMAVS KNDRSLEEGH  120
DNAIRGTQNV DGQGFGSADG TTTSQATCAI KNEVIDVESD TSMDIDEPDT QEDQLHEDSE  180
IGLPRELGST EHFYSRTQME NPSEALEAAK KFSSKHPFFR AILHKAYVDK GRLVIPKSFQ  240
NSCIGKKKYV RLQDSKRRWL VKCTSNRNSC RLSAGWYQFV RDHALKVGDV CVFELIDRND  300
AVMKVSIFRC NS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-30B3 family protein