PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000348.1_g540.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Dof
Protein Properties Length: 332aa    MW: 34881 Da    PI: 7.3383
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000348.1_g540.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof89.72.4e-282873247
                     zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalr 47
                               ++++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG  r
  Pav_sc0000348.1_g540.1.mk 28 EQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGGTR 73
                               57889*************************************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MPSDSSDQQN NQNRRPAKAQ TPGAPPPEQE HLPCPRCDST NTKFCYYNNY NFSQPRHFCK  60
SCRRYWTHGG GTRKNAKRSR TTSSSAMIST TATSSLSDHP IPPTPVFMNP GGAAAFGDLK  120
GNVGNGCGGA SFTSLLNTQG PGFLALGGFG LGLANGFEEM GFGLGRAVWP FPGVGDGGAG  180
VGGNGGGHGM MNTWQFESGE GGGIVNVGVG SVGGEFCSWP ELAISTPGNA FMLLVTELQS  240
YAGAQGIGAN CGRQGDNLPT PDKVIQLCKS RNIQRIRIFD PQQDVLQALQ GSGIQVIIDT  300
LNIDVPTLAN DPAFATTWLQ TNIIPFASSV NF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50410.15e-34Dof family protein