PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000348.1_g1180.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 214aa    MW: 24739.8 Da    PI: 6.9049
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000348.1_g1180.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-1959112457
                                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                                 ++++t+eq++ Le  F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Pav_sc0000348.1_g1180.1.mk  59 KRKLTAEQVNLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKN 112
                                 5689************************************************95 PP
2HD-ZIP_I/II1192.5e-3858149293
                 HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                 kkr+l++eqv+lLE +F +e+kLe+e+K +la+eLgl+prqvavWFqnrRAR+k+k+lE++y+ Lk+++d+ ++en++Le+e+
  Pav_sc0000348.1_g1180.1.mk  58 KKRKLTAEQVNLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKEHDSTVSENRKLESEM 140
                                 9********************************************************************************** PP

                 HD-ZIP_I/II  85 eeLreelke 93 
                                 ++L+e+l++
  Pav_sc0000348.1_g1180.1.mk 141 SKLKEQLSD 149
                                 *****9975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MTTKTNHQVV EEDDHLLLIS HLYPSDVYTQ IVPQQGASKP KRRRKKSKSG EAGGAGLKKR  60
KLTAEQVNLL ELNFGNEHKL ESEKKDRLAS ELGLDPRQVA VWFQNRRARW KNKKLEEEYS  120
NLKKEHDSTV SENRKLESEM SKLKEQLSDA EKEIRRLSER VDHGGSSNSP SSSLSMDAID  180
PPFLGEFGVE EYDDVFYMPQ NNYIHGMEWM NLYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14160KRRRKKSKSGEAGGAGLKKR
24161KRRRKKSKSGEAGGAGLKKRK
34261KRRRKKSKSGEAGGAGLKKR
44262KRRRKKSKSGEAGGAGLKKRK
54363KRRRKKSKSGEAGGAGLKKRK
64464KRRRKKSKSGEAGGAGLKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-66HD-ZIP family protein