PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000323.1_g160.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family WOX
Protein Properties Length: 161aa    MW: 17998.7 Da    PI: 7.4385
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000323.1_g160.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox34.43.8e-111965344
                               --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHH CS
                   Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqV 44
                               +R+++t+eql +Lee+++   r+p+a+++++++++l    +++ ++V
  Pav_sc0000323.1_g160.1.mk 19 SRWCPTPEQLMILEEMYRAgIRTPNASQIQHITAQLslygKIEGKNV 65
                               8*****************99****************77777777776 PP
2Wus_type_Homeobox76.24.8e-251765250
          Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNV 50
                               +++RW+PtpeQ++iLee+y++G+rtPn+++iq+ita+L+ yGkie+kNV
  Pav_sc0000323.1_g160.1.mk 17 SSSRWCPTPEQLMILEEMYRAGIRTPNASQIQHITAQLSLYGKIEGKNV 65
                               689*********************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    
MPLSGKHSMT TLTPANSSSR WCPTPEQLMI LEEMYRAGIR TPNASQIQHI TAQLSLYGKI  60
EGKNVGVEDA LMNHAWKMEI PQRVEMEKSV MSMYGRDWMM MMMEDMGPPS PCCSTSTRTT  120
TTRQPLKTLQ LFPITATNLK EESSPSSSNP LSPPTTPTPN Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.11e-24WOX family protein