PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000305.1_g140.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 738aa MW: 81383 Da PI: 10.2532

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000305.1_g140.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.2	3.3e-12	38	91	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 +W t+E++ll++avk++G ++W+++a +++ + t+++ck+++++++ Pav_sc0000305.1_g140.1.mk 38 SSWGTWEELLLACAVKRHGINDWNSVAMELQaktslphLLTTPYNCKLKYHDLR 91 57**********************************899*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 738 aa Download sequence
MMEGGTANHD ATTTHTNNNN NSNNSEPELQ DQTTTFTSSW GTWEELLLAC AVKRHGINDW 60 NSVAMELQAK TSLPHLLTTP YNCKLKYHDL RRRFKSRYSS QHQNDDVALP SPPPPPDHHD 120 DPPSIPWLDD LRKLRVAQLR QELNSYDVSI VSLQLKVKRL EEEREDSSKD DEAKPDLEEE 180 DSKGHRSEND KNIQDEPDRS KPDQENQSVN GSNSTCSKSL DNKPGQEGRV ASEPEPHPVP 240 DGSHEPTKGT GGGGHSESES DKGSSETVAK RRSREGKGGG DSAGEMRESS EAQSSASLTR 300 KWNRKRRRRV EVPEQQRNNE ELLLVKSQPL VGVLQMIRAH EHSSLFERRL PTQESDKYKS 360 MVQQHVDLET IQSKLHKDTY SSCALSFYRD LLLLFNNAVV FFPKSSLESL TAHQLRRLVL 420 NEMKKNNLIT RPPPNPSPSS EPSDSLPAAA VHAPPPTTTP PCPPPTQPPK RPDQLERSDS 480 LLAKHKSTAP IIVCRKRSSI SSKPSAAASI FDVKPKGEQQ QPKQQQQGDE KKKAAPFDVK 540 TPINNNKASS NDDVVEGHKG GGGGAKAKDN PVTTGTRSSR RTHHENNNNK DGSGSTKKQT 600 ETPKADKKSK TEAAALDKKR SAAADFLKRI KRNAPAADTL KGGSGSGSGT STRSGGGEHK 660 RRGDGKVDKV KERVLRQSGG DKKKQAKEES SSPSKRSVGR PPKKAASETA NVVTSSKRPR 720 ENGGKQEASR RPRKRSRR

Sequence ? help Back to Top

Protein Sequence Length: 738 aa Download sequence

MMEGGTANHD ATTTHTNNNN NSNNSEPELQ DQTTTFTSSW GTWEELLLAC AVKRHGINDW  60
NSVAMELQAK TSLPHLLTTP YNCKLKYHDL RRRFKSRYSS QHQNDDVALP SPPPPPDHHD  120
DPPSIPWLDD LRKLRVAQLR QELNSYDVSI VSLQLKVKRL EEEREDSSKD DEAKPDLEEE  180
DSKGHRSEND KNIQDEPDRS KPDQENQSVN GSNSTCSKSL DNKPGQEGRV ASEPEPHPVP  240
DGSHEPTKGT GGGGHSESES DKGSSETVAK RRSREGKGGG DSAGEMRESS EAQSSASLTR  300
KWNRKRRRRV EVPEQQRNNE ELLLVKSQPL VGVLQMIRAH EHSSLFERRL PTQESDKYKS  360
MVQQHVDLET IQSKLHKDTY SSCALSFYRD LLLLFNNAVV FFPKSSLESL TAHQLRRLVL  420
NEMKKNNLIT RPPPNPSPSS EPSDSLPAAA VHAPPPTTTP PCPPPTQPPK RPDQLERSDS  480
LLAKHKSTAP IIVCRKRSSI SSKPSAAASI FDVKPKGEQQ QPKQQQQGDE KKKAAPFDVK  540
TPINNNKASS NDDVVEGHKG GGGGAKAKDN PVTTGTRSSR RTHHENNNNK DGSGSTKKQT  600
ETPKADKKSK TEAAALDKKR SAAADFLKRI KRNAPAADTL KGGSGSGSGT STRSGGGEHK  660
RRGDGKVDKV KERVLRQSGG DKKKQAKEES SSPSKRSVGR PPKKAASETA NVVTSSKRPR  720
ENGGKQEASR RPRKRSRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	304	308	RKRRR
2	305	310	KRRRRV
3	730	738	RRPRKRSRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	1e-76	MYB_related family protein